Genomic Location: NC_058074.1:11506861...11519690
NR annotation: XP_029190892.2, smoothened homolog isoform X1 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_029190892.2 |
| Protein |
| XP_029190892.2 |
| UniProt accession | Description |
|---|---|
| P97698 | Protein smoothened OS=Rattus norvegicus OX=10116 GN=Smo PE=2 SV=1 |
| P56726 | Protein smoothened OS=Mus musculus OX=10090 GN=Smo PE=1 SV=2 |
| Q99835 | Protein smoothened OS=Homo sapiens OX=9606 GN=SMO PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007864 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01392 all species → | Fz | Fz domain | Domain | Interproscan |
| PF01534 all species → | Frizzled | Frizzled/Smoothened family membrane region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000539 all species → | Domain | Frizzled/Smoothened, 7TM | Interproscan |
| IPR017981 all species → | Domain | GPCR, family 2-like, 7TM | Interproscan |
| IPR036790 all species → | Homologous_superfamily | Frizzled cysteine-rich domain superfamily | Interproscan |
| IPR020067 all species → | Domain | Frizzled domain | Interproscan |
| IPR015526 all species → | Family | Frizzled/secreted frizzled-related protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11309 all species → | FRIZZLED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007166 all species → | Biological Process | cell surface receptor signaling pathway | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0004888 all species → | Molecular Function | transmembrane signaling receptor activity | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005113 all species → | Molecular Function | patched binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0005929 all species → | Cellular Component | cilium | Interproscan |
| GO:0007224 all species → | Biological Process | smoothened signaling pathway | Interproscan |
| GO:0007389 all species → | Biological Process | pattern specification process | Interproscan |
| GO:0007417 all species → | Biological Process | central nervous system development | Interproscan |
| GO:0016021 all species → | Cellular Component | membrane | Interproscan |
| GO:0030425 all species → | Cellular Component | dendrite | Interproscan |
| GO:0071679 all species → | Biological Process | commissural neuron axon guidance | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06226 | SMO; smoothened | - | G protein-coupled receptors | ko04030 | deepkoala |
Transcript abundance of XP_029190892.2 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
