Genomic Location: NC_058078.1:21053963...21064243
NR annotation: XP_029191237.1, NPC intracellular cholesterol transporter 2-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_029191237.1 |
| Protein |
| XP_029191237.1 |
| UniProt accession | Description |
|---|---|
| P61916 | NPC intracellular cholesterol transporter 2 OS=Homo sapiens OX=9606 GN=NPC2 PE=1 SV=1 |
| P61918 | NPC intracellular cholesterol transporter 2 OS=Macaca fascicularis OX=9541 GN=NPC2 PE=2 SV=1 |
| P61917 | NPC intracellular cholesterol transporter 2 OS=Pan troglodytes OX=9598 GN=NPC2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000868 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02221 all species → | E1_DerP2_DerF2 | ML domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039670 all species → | Family | Sterol transport protein NPC2-like | Interproscan |
| IPR033916 all species → | Domain | Npc2 like, ML domain | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR003172 all species → | Domain | MD-2-related lipid-recognition domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11306 all species → | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015918 all species → | Biological Process | sterol transport | Interproscan |
| GO:0032934 all species → | Molecular Function | sterol binding | Interproscan |
| GO:0032367 all species → | Biological Process | intracellular cholesterol transport | Interproscan |
XP_029191237.1.Transcript abundance of XP_029191237.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
