Genomic Location: NC_058068.1:17726721...17731802
NR annotation: XP_029194574.2, LOW QUALITY PROTEIN: eukaryotic translation initiation factor 2 subunit 1-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_029194574.2 |
| Protein |
| XP_029194574.2 |
| UniProt accession | Description |
|---|---|
| Q6GL89 | Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus tropicalis OX=8364 GN=eif2s1 PE=2 SV=1 |
| P05198 | Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens OX=9606 GN=EIF2S1 PE=1 SV=3 |
| P68102 | Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus OX=9913 GN=EIF2S1 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007009 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07541 all species → | EIF_2_alpha | Eukaryotic translation initiation factor 2 alpha subunit | Family | Interproscan |
| PF00575 all species → | S1 | S1 RNA binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR011488 all species → | Family | Translation initiation factor 2, alpha subunit | Interproscan |
| IPR024055 all species → | Homologous_superfamily | Translation initiation factor 2, alpha subunit, C-terminal | Interproscan |
| IPR003029 all species → | Domain | S1 domain | Interproscan |
| IPR024054 all species → | Homologous_superfamily | Translation initiation factor 2, alpha subunit, middle domain superfamily | Interproscan |
| IPR044126 all species → | Domain | IF2a, S1-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10602 all species → | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003743 all species → | Molecular Function | translation initiation factor activity | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005850 all species → | Cellular Component | eukaryotic translation initiation factor 2 complex | Interproscan |
| GO:0006413 all species → | Biological Process | translational initiation | Interproscan |
| GO:0033290 all species → | Cellular Component | eukaryotic 48S preinitiation complex | Interproscan |
| GO:0043022 all species → | Molecular Function | ribosome binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03237 | EIF2S1; translation initiation factor 2 subunit 1 | - | Translation factors | ko03012 | deepkoala |
Transcript abundance of XP_029194574.2 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
