Gene detail

Detailed information of XP_029198024.2 in Acropora millepora

Genomic Location: NC_058079.1:1884535...1903632
NR annotation: XP_029198022.2, E3 ubiquitin-protein ligase RNF220-like [Acropora millepora]
Species abbreviation AMILL · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VTB9	E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens OX=9606 GN=RNF220 PE=1 SV=1
Q08DV5	E3 ubiquitin-protein ligase RNF220 OS=Bos taurus OX=9913 GN=RNF220 PE=2 SV=1
Q8HXD5	E3 ubiquitin-protein ligase RNF220 OS=Macaca fascicularis OX=9541 GN=RNF220 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005774 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15926 all species →	RNF220	E3 ubiquitin-protein ligase RNF220	Family	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031824 all species →	Domain	E3 ubiquitin-protein ligase RNF220, middle domain	Interproscan
IPR040178 all species →	Domain	E3 ubiquitin-protein ligase RNF220, RING finger	Interproscan
IPR052443 all species →	Family	E3 ubiquitin-protein ligase RNF220-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13459 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25174	RNF220; E3 ubiquitin-protein ligase RNF220	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.