Gene detail

Detailed information of XP_029203980.2 in Acropora millepora

Genomic Location: NC_058076.1:2726362...2742713
NR annotation: XP_029203980.2, LOW QUALITY PROTEIN: protein phosphatase 1 regulatory subunit 21-like [Acropora millepora]
Species abbreviation AMILL · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_029203980.2

ATGAGCGCAGACTCTCAAAATCTGCAGACAAAGTATCAGAAACTTGCTGCCGAATTTGCAAAGCAAAGAGCACAAGTTACTGTCTTGAAGAAAGCTGTGATCGAAGAACAAGGAAAAACTAAGACACTTCAGGAAAATGTGCGACAAAAGGATCAGTCGATCAGGAAGTTTGAGCAAGAAATTGACAGCCTGCAGTTTCGAAATGACCAGTTGTCAAAAAGGGTAGCAATATTACAGGAAGAACTTGATGAGTATGATGGAAAGAACAGGAGAGGAAAGACAAGAGTTGATGGCGTGACAAGGCCAGATGATAATGATGTGAAAGACCAAGAACTTCAAATTAAGATTCAAGAAAATGAAAGGTTACAGAGAGAGTTGTACGAAGCAAGCCAGGAACACAAAGGAAGTATACTTTCACTTCAGGATAAACTTGAAGCATATGAAAGAAATTCAACAGACTATCAGAAAGTTTTGGATGAGGCCAATGAAAAGCACAGAATGGTTGTTGAGAAACTTAATGAGGAAAGAGCAATGCTTGAGGCCAGACTCCATAAGACAGAAGAAGAATTAAGACACGCAAGTCTAAAGGCAGAGAAAAGTCATCAACAACTGAAGCTCTTACACAAGGAAATGACCTCTAGATATGATAATGTATCCAAGGTTGTGACGGAGAAACTTCCTTTTAATGATACAAGTATCAGAGAATTCAACAAACTCAATGTACCCACATATGACAGAAAACATCAAGTTAAAGCAAAGGAGTTAATCTGCCAGGCAGTTGAATTGCTTCATGAATTGGTGACAGCAATGTCCAACTTCCATACCTACACAGAACAGAGGCTGAAAATAGTTTTTGTGGAATCCAACCAACAGCAGTTAAGCCCTGCTACTCAAAAGTTTTGTGATTACCTTCATGAGAATGCAGCTGTACTGAGATCTGTCGATGAATCATTTAGTTCCTTCTACAACAGTATCAAAACAGATAATTTAATATCATTGGAAACTATTCCTGGCTTTCATGAATTTTCAGAAGCATTCCACAAATACAATAACTACCTTAAGAAGCTTTTACCATATTATGTGTTGAGCACTAGTGAAGAATGCAAAGCATCAACTTGTTCTTCCACCCTGGAGGCCTACAACAAAGCTCTACTGCATTCGCTAACAAAACTGATTACAACTTTTAATAAGATTGCCTCTCACATCGGAGCCCTGGCTTCTGCAAGTTCTGGTTCTGAGGGAATTCTATCTGCAAACTATAGTTCTTTGCTTACGCTTCTTAATACTTCTTGTCAAGAACTGCATGAATGTGTTAAAGTTCTGTCATCACATTTCCAATCAAAGGTCTCGTTGGAACACCAATTACCTACAGTAACACAGACTTTGAAAAGAACAGATGAATGTCTTGTTTCCTCTTTGGTTTCTCTTGTGACTGTCACTGCAAAGATAGCAAAGTTCATGAACAATAACTTGGAGTTCTTTTCTACCAAATCTGGTATCAAAAGCAGAGGTCTTACAACTACAACAGGCAGTGAGATGACCTCTTCCCCAGCAGTTGTAGAGTTCAGGCACCATGCGGCAGATTACATTGCAAAGCTCATAAAACCCAGGCCAGAATCTGTTCCTTACAAGATGGCTCTTTACAATCACAAGGTTCTGGTGAGCTCAACAGAAAGCAAAGAGTCCTTGGAAAAACAGATCTCTGTGACAAATGAAAGAATATCGAAGCTCGAACAAGACAAGGAACACTGGATGCTGGAGTCTCGGCTGCTTCAAGTCAAATATGAAGGAATCGAAGAAAGTGCAGGCTTTGCAGCAAGAACTCAACAAAGCATTGGAAAAAGAAAGTGGCTAACTTCGTTAGTGGAGCTGCATCTCTCTCAGACGAAACTGACTCAGCGTCATCAGTCCCTGACGTCACACAGCTATGAGGTTGCACCTCCTCCGTCCGACCTCGGAGCTCTTGAGGCCCTTAAACTGGAAGAGAGTGCTGAAGACGTGGCTCGAGAAACTTTGATCAAAAATCATTTTACGCAAAGAATAGCGGAACTAACTTCAAAGGTGCAATTTACCGAGAGTAAGGCAGCATCTACCAATGCAGAGTGTCGTGCGCTCTATCGTCGAATGAAGCAAACCGAGACAGTAAAGCAAGAGCTCGCAAAAAGTCTCAAGATTGCGACTGCAAAAGTCAGTCAACTCGAGGACGAGGTAGAGACAGTAAAACGCAGTTACGAAACGCAGTTGTCAATGATGAGCGATCACTTGTGCGGAATGAATGAGAAGCTGACGTCACAGCAGGATGAAATCGAGGCTCTGAAGAGTGGCAAGGGGAAGAAGGGTAAACAGCGGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZMI0	Protein phosphatase 1 regulatory subunit 21 OS=Homo sapiens OX=9606 GN=PPP1R21 PE=1 SV=1
Q5ZL12	Protein phosphatase 1 regulatory subunit 21 OS=Gallus gallus OX=9031 GN=PPP1R21 PE=2 SV=1
Q6IR70	Protein phosphatase 1 regulatory subunit 21 OS=Xenopus laevis OX=8355 GN=ppp1r21 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005706 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10212 all species →	PPP1R21_helical	Protein phosphatase 1 regulatory subunit 21, six-helix bundle	Domain	Interproscan
PF21636 all species →	PPP1R21_C	Protein phosphatase 1 regulatory subunit 21, C-terminal	Coiled-coil	Interproscan
PF10205 all species →	KLRAQ	Predicted coiled-coil domain-containing protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019348 all species →	Domain	Protein phosphatase 1 regulatory subunit 21, six-helix bundle	Interproscan
IPR049372 all species →	Domain	Protein phosphatase 1 regulatory subunit 21, C-terminal	Interproscan
IPR019343 all species →	Domain	Protein phosphatase 1 regulatory subunit 21, N-terminal	Interproscan
IPR040024 all species →	Family	Protein phosphatase 1 regulatory subunit 21	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21448 all species →	SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17562	PPP1R21, CCDC128, KLRAQ1; protein phosphatase 1 regulatory subunit 21	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.