Gene detail

Detailed information of XP_029208564.2 in Acropora millepora

Genomic Location: NC_058076.1:12242932...12244764
NR annotation: XP_029208564.2, helicase SRCAP-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000657 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_029208564.2. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35558 all species →	SGNH_HYDRO DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_029208564.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_029208564.2 across 54 RNA-seq samples of Acropora millepora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

54Samples

37TPM > 0

2Conditions

347.3Max TPM

56.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole larvae	30	27	97.89	347.32
branch	24	10	5.69	33.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR1929624	whole larvae	whole larvae	adult	not recorded	SRP056536	347.32
SRR1929625	whole larvae	whole larvae	adult	not recorded	SRP056536	330.26
SRR1929610	whole larvae	whole larvae	adult	not recorded	SRP056536	300.24
SRR1929609	whole larvae	whole larvae	adult	not recorded	SRP056536	164.88
SRR1929627	whole larvae	whole larvae	adult	not recorded	SRP056536	163.88
SRR1929616	whole larvae	whole larvae	adult	not recorded	SRP056536	156.92
SRR1929614	whole larvae	whole larvae	adult	not recorded	SRP056536	138.04
SRR1929619	whole larvae	whole larvae	adult	not recorded	SRP056536	122.11
SRR1929630	whole larvae	whole larvae	adult	not recorded	SRP056536	100.70
SRR1929629	whole larvae	whole larvae	adult	not recorded	SRP056536	99.85
SRR1929608	whole larvae	whole larvae	adult	not recorded	SRP056536	95.27
SRR1929622	whole larvae	whole larvae	adult	not recorded	SRP056536	94.43
SRR1929626	whole larvae	whole larvae	adult	not recorded	SRP056536	89.08
SRR1929621	whole larvae	whole larvae	adult	not recorded	SRP056536	78.65
SRR1929607	whole larvae	whole larvae	adult	not recorded	SRP056536	70.80
SRR1929617	whole larvae	whole larvae	adult	not recorded	SRP056536	66.90
SRR1929628	whole larvae	whole larvae	adult	not recorded	SRP056536	66.45
SRR1929615	whole larvae	whole larvae	adult	not recorded	SRP056536	64.35
SRR1929631	whole larvae	whole larvae	adult	not recorded	SRP056536	58.66
SRR1929605	whole larvae	whole larvae	adult	not recorded	SRP056536	56.21
SRR1929611	whole larvae	whole larvae	adult	not recorded	SRP056536	52.19
SRR1929612	whole larvae	whole larvae	adult	not recorded	SRP056536	49.63
SRR1929633	whole larvae	whole larvae	adult	not recorded	SRP056536	47.29
SRR1929618	whole larvae	whole larvae	adult	not recorded	SRP056536	39.35
SRR1929623	whole larvae	whole larvae	adult	not recorded	SRP056536	34.28
SRR1929606	whole larvae	whole larvae	adult	not recorded	SRP056536	29.52
SRR1929632	whole larvae	whole larvae	adult	not recorded	SRP056536	19.31
SRR1929613	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929620	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929634	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929598	branch	branch	adult	not recorded	SRP056536	33.88
SRR1929586	branch	branch	adult	not recorded	SRP056536	24.60
SRR1929597	branch	branch	adult	not recorded	SRP056536	14.42
SRR1929592	branch	branch	adult	not recorded	SRP056536	14.32
SRR1929590	branch	branch	adult	not recorded	SRP056536	11.36
SRR1929602	branch	branch	adult	not recorded	SRP056536	9.43
SRR1929591	branch	branch	adult	not recorded	SRP056536	8.97
SRR1929584	branch	branch	adult	not recorded	SRP056536	7.06
SRR1929601	branch	branch	adult	not recorded	SRP056536	6.48
SRR1929588	branch	branch	adult	not recorded	SRP056536	5.92
SRR1929581	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929582	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929583	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929585	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929587	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929589	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929593	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929594	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929595	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929596	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929599	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929600	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929603	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929604	branch	branch	adult	not recorded	SRP056536	0.00

Source: CnidoSite RNA-seq expression matrices (AMILL_TPM, StringTie quantification over 54 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.