Genomic Location: NC_058071.1:6622403...6633803
NR annotation: XP_029211130.2, lambda-crystallin-like isoform X1 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_029211133.2 |
| Protein |
| XP_029211133.2 |
| UniProt accession | Description |
|---|---|
| P14755 | Lambda-crystallin OS=Oryctolagus cuniculus OX=9986 GN=CRYL1 PE=1 SV=3 |
| Q8SPX7 | Lambda-crystallin homolog OS=Bos taurus OX=9913 GN=CRYL1 PE=2 SV=3 |
| Q811X6 | Lambda-crystallin homolog OS=Rattus norvegicus OX=10116 GN=Cryl1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004239 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00725 all species → | 3HCDH | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | Domain | Interproscan |
| PF02737 all species → | 3HCDH_N | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022694 all species → | Family | 3-hydroxyacyl-CoA dehydrogenase | Interproscan |
| IPR006108 all species → | Domain | 3-hydroxyacyl-CoA dehydrogenase, C-terminal | Interproscan |
| IPR013328 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase, domain 2 | Interproscan |
| IPR006180 all species → | Conserved_site | 3-hydroxyacyl-CoA dehydrogenase, conserved site | Interproscan |
| IPR006176 all species → | Domain | 3-hydroxyacyl-CoA dehydrogenase, NAD binding | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR008927 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48075 all species → | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006631 all species → | Biological Process | fatty acid metabolic process | Interproscan |
| GO:0016616 all species → | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0070403 all species → | Molecular Function | NAD+ binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0050104 all species → | Molecular Function | L-gulonate 3-dehydrogenase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13247 | CRYL1; L-gulonate 3-dehydrogenase | EC:1.1.1.45 | Pentose and glucuronate interconversions | ko00040 | deepkoala |
Transcript abundance of XP_029211133.2 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
