Gene detail

Detailed information of XP_029211908.2 in Acropora millepora

Genomic Location: NC_058069.1:17249208...17264883
NR annotation: XP_029211908.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114975827 [Acropora millepora]
Species abbreviation AMILL · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_029211908.2

ATGGAGAAGTTAACTGACGATGATGCGAAAAAGCTAGCATCGGGCTGGGTGAAAAGAATTCAAAATTCACTTTTGGCTCCGGACAGTGATGTCACAAGTTTGGGTAACGTAAGCTCTCGAATCAGATCAAGTGACGAGCCGAACTTCAGTGTTGGCTTGGAAAATGGAAAAGTACATGACCACAATTTAGGATCGAGTCCTGTGCTTGCAGATTCTGGAATTAACGTGAGCTCTGATATGTTTTCTGGGCATTCTGGCGTTTCCACAAACTGGAATCATAACGATTCATCCTTCCAAAACACATTCGAACATTCGAACATTTTGGTCGATCCCTCATCAGAACCAAACGGCCTGGCTACTGCAAGACCCGACGCCAACTTCTTGCGACGAAAACGCTTGGAGTTCTTCAACAAGAGCAAAGAATTGCAAGAAAAAGGAGATTTTGCTGGGTTGCCCGATAGGAATCACAATTTACACGTTAAAGAAAGTTGCGCGAAGTCTGCGCAGTCCCTTCAGTCTTGTAAAAACCAATGGGAAGTCGAGCAACTTGACTGCAATCAAGATATCTATGCAAATCACAAACCAGCGGGTAATATGCATCAGCTAGAAGCATTTCAAAAACCTTTATCACAGATTCTTAATGGTTGTGCATCAAGCAATGAGCAGAAGCCTACACACAGAACTGCCAACGGTTTTGAAAGTGACGAAGATGAGTTCAGGTTGGAGCTGTGGGGTTTAAAAGAATCTGTTAATTCTGGGGAAGTTAATTTAAATGCTTATCTTTCAGAGTCTATGGGGGGTAAGAGATCCATCCCTGCGTCACAATGCCAATTCGACAACTTTGTTGATGAACCCACCAGATATACATGTACCCCTGTCCAACCACTTCAAAAGGAATCAGTCACACTTCAAAAACTATCTGATAGCAAAGATTATAATCAGTCGCACATATGTGCTTCAGAAGAGTTTGGTAATGAAATGCAAAAAGATGACAACAGTCATTCTCTCTTGAACCGAAAGACACTTGCACAGGAAATTTGTAATGGACACTTTAGTGGTCCTGAGCCTCAGATCAATGGCCCTTTATATTGTGGTTTTGACAACTCTGATTCTGAGACGAGTTTGTTGAGTTTTGGTTCCAAGTGTGATGATGTCCATTACAGAAAACTTGAAGAAACGAGTCCACGGGGAAGAAGCAATCATCTAGAAAACAAGAACAAACCAAAAAGGAGCAAAGATCAAATTCTTTTGGAACTTACTGAGTTCATTGAAGGCTTTGGAAGTCCTAAAGATTCAACAAAGATTAGTGATGTCAATGATAGGCAACTAAGATGCTCTTCAGACAAGACATTACCATTGAGTACTGAAAAGGTATTCAATGGATGCACTGAAGATAGCAAGAGAAACCAGTTTGGTGAAATAAGTGGCTATAGATATTCCCCTGGGGAATTGATTTGTAAGTCACGGAGTGATCCTGAAAATATTGACCTGTCATCTAATCAAATGGGAAAAGGAAGTACTTTGCTGCCATCTGAGCATCATAAAAATGTCATGGGAAAGATTTGTCCCTCATGTGATGAAGTTAACAGTAAGGCTGCCAATTGGTGTATTGAGTGCGGTAAAGCTCTTGTTTCTGTTAAACCAACTTGCTTGACAGCCAAACAACAAAAGGTATTTGAGAAACAATGTGAAGAAACAAAAGTGCTGATCGCAGAAGCATTAAAAACACCAATGAATTTTTCACACCTCTTATCCTTAGAAAAGGCTGAAGAAGAGGAAAGGTTGTTAAACAAAGGTATCTCAAATCTTTCTTTAAGAGTATCTCAAAGTACAAAAAATTTCGAAGAAGAGAAATATAATTGTTTGTCCAAACCTCATGAATACAAAAGGCGTTGGGTGAGATCAAGCATCGCTTGGAGCACCTATCATCCAAGTGAACTTACAAAGAGTCGTTCTTTTGTCAACGGTAAGGGGAAAACTCATGAAAGGCAAAGAGCAACTTCATTTTCTGACGTCACTAGTGTTTCGAATTCGAAGGGAAAAGAGAAAGGGAGTAAACACAAGAAGACAAATATTCGGAGCAAATCTGCACGGAAGAGAACAGTCAGTTGTTGTTCGTTAAGTGGTGATGAAGCCAAAGTGGCAGATGCAGGTGACAAAGGGTTTACAAACTTAAAATCTGTAGCCCATCATCAGAATGCTAGTTCAAGAACTAATCAGAGAGGTAGACAAGTACAAAGTTTTGTGAAACAAAATAATGATTCTTCCAGAGAGAGTCAATATCATTCCAGGCCACCACATCATCACAGCTTGCCTAAGTCTTCTAGCTCATCGTCTTTGGAGGATGGAATGAGATCATTAAAGTCAGTGAAAGTGGCAAAGGCTGTACCACCCTTAGATCTAAAAGGTGTTGATAACTATGAAAGAATGTTGACACTGATCCGCTCACAGCACAGCAGTGAGCCATTACCATACCTTTGCCTCCCTGATGAGATCCTTTTGCGAATATTTTCATTTCTGCCTCACAAGGACTTGGTATCTTGCTCCCTAGCTTGCAATCAGTTTTTCCGCATCTCCATGGATGAAACATTGTGGAAAGTCATTGTCCTGAAAAAGAACAACAACATCACTGACGAGTGGCTTCAGGTGATTGGTAAACGCAGACCTGTAAGTCTCACAATATCCCAGTGTCACAGTGACAAAGTCACAGCTAAAGGACTCAGAGATTTGTTCAGGAACTGCAGTGACTCACTGGAGGAGCTCAACTTTAGTAGGTGTCGTGGTGGTGAATTGATTGGCGAGTCTATTTTACTGCACGTAGCAGCACGATGTTGCTGGTTGAGATCGGTAGATGCCAGCTGGACCAATGTCAGTGATTGCGGTGTCCAAGCTCTGGTTGATAATGTCAAGAGGTTGGAATGTCTTTGTTTAAATGGTTGTCAAGCGGTCAGCGATAAGTTTATCAAGAGCATGGCTACCAAACACGGAAACAACCTCAGGATCTTTGAAGTGTTCGGCTGTTTTAATATCACGCCTTCTGGAATCAAACTTCTTGGTCAAAGTTGCAAGAAACTGCAAACTTTAAACATTGGCCAGTGTCACAAGATGACTGACTCAGCTATCGGTGGCTTGGTATCGAATCTGCCTGAACTGGAAAATCTTGACCTGAGGGGATGTAAACAGATTCGAGATTCTGCTGTGAGGAAGATTGTTAAATATTGTCCACTCGTTACTACCCTCGTGCTGGCTAACTGCCCACTTATCACTGATGTGTCTCTGAAAGAAATCGCCACCAATCTTCCCAGGATAAGGTCTTTGGACATCTGTGGATGCTCCAAAGTGAGTGATAACGGAATTTGTACTCTTTCAAGAAATTGCCAGCAGTTAGAGTTGTTAGACTTGACTTCGACCGGAGTGGGACACAAGAGCGTCTTATCGCTCGCAAACTACTGCAGTCAGAGTTTGTGTAACTTGAAGCTGAGTTTTTGCACAGACATTTCGGATGACACTGTGGTTCATCTCGCCAAAAACTGCAAAAGGCTCAACACACTTCATTTATACGGCTGCAAACGGATAAGAAATACTTCAGATCTGAGGCTTCTTAATCCCGCACTGTCAATCGAGTGTTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005825 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_029211908.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.