Gene detail

Detailed information of XP_044162969.1 in Acropora millepora

Genomic Location: NC_058078.1:4824814...4855930
NR annotation: XP_044162969.1, mucin-like protein isoform X2 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044162969.1

ATGTGTGGCTGCCAAAATGGAGGTCAGTGTGTGGAACCGAAGGTGGAAGACGCCCTCAACAACGCCAGCAAATTCATTTACCAGGGATGTAACTGTACGGCTGGTTACACAGGACGCTTCTGCGAGAACGATCTCAACGCATGCGAGTTAAACGGAAATCCTTGTTTCCAGGGAGTGAGTTGTACAGACCACCCAGCCCCGGCGAATCTCTCGGGCTTCACCTGTGGGCCATGTCCTGTAGGCTATAATGGCGATGGCATCGATTGCCTTGATATTGATGAATGTGCGTCTAATATGAGCTGCGCGCAGGAATGTAACAACACCCAGGGCTCGTTTCAATGTAGCTGCAATTCTGGCTTCATTTTAAACAGCGACCAACGGAGCTGTAACACGGATCCTTGTTACATCAACCCATGTTTGAACAATGGGACATGTTATGTCGACTTCAGCACCAGCAACTACACATTTTTTTGCGTCTGCCCGATTCCTAAACAGTACGAAGGAAAGGACTGTGGCACTCCAATCCCGTGCTTCAAGGACATAATGTACCCATTTGGCAAAGAACAGGGAGACCACGAAATCACTGAGCATTATGTTGAGAGCAAGACTTGTCCTCGAGTAGCTATAAAGGATGGCCTATATTTTTTCGATGACCAGTTTTACGAGATATTCATTTGTGCCAATGGGGTGCTTCGCTTCGATCGGGGCTTTGAGCTAAGGACACCAATTTCCAACTTCATCGCCACGAGATTTCAATATGAGATTCCCATGCTGTTTCCTTATTGGTCAGTAATCGAGCGTAGGAAGTCGTTCTGTGTCGGTGAGGGAGGATGCCTCTTCAATCACGTAAACCGTTCTTCCGTGCTATATCAAATGTACACAGCTTCCTCGCACACGCCTTCGGCAGCCTATGTTCTCGGCAATGCCAGTGAACAAGTCAAGGGATACCAAATGAAAGAATCGGGAGATTTTTCAAGTTTCGTAGCCAAGAGGGTTCTCGTGGTGACTTGGCTGCGACTTCGCCCGTTGGAAGAAACACCATCTGAGGGAATTACAAACACATTCCAAGCTGTTGTTATTACCAATGGAACTTATACATTTATCAAGTACCACTATCCTTGTGGCTCTCTTCTGTGGTCGGCACCAGGGGATTTGCAAGGAACTTCAAGATACACTTACAAAGAATACCCCGTGGCTGGTTTCAATGCAAAATTGAGCGACTACGACGAAGTTAAATCTCGTGGCCTCAAGGGAACAGGGACATATGAAGTTAAAAATCTGGACATGAGTAATGGAAACACCGGTAGAAAGGGAGAGTTTTTCTTCAGAATTGAACAAAGGACGGGAGACGATGCGAAAGCGAAATGCAATACCTGGTTTGAATTCCAAGAGAAGGAATTGAAAGATGAACTTCTTGCAGCGGACCGATCCATCACACCATGTCCATGCGTATTCTGGCAGATGTGGTTTGATAGCAGGTTCAGTTTCGAAGGATGGAGTGATGCTTTACATTTCAAGTCTGTTAGAAGGCGATTTATCTTCAAATGGGTTAGCACTGGTGAACTGTTACTTGCATCGGTTCACAGAAAGTGCAACTATGATTTTAGAACTGGTTTAGCGATTAGAGCGGAGGACAGCACTTTAGAGGTCCAGTACTGGATACGCCCCAGCGGTTTGGTGGAGGACAGTACAGCACGACAATTGTGCTTAGTTGAGTCCAACAGTGTAGACAAATTCAACAGTGTACGGCTGCCTGATAACTGTGGTCGATACTTCTTTTTTCTCATATTTAGAATTTTAACTTTTGGCGATCCACACATTAAAACATTGGACGGCGGTAACTACACGTTCAATGGTATTGGAGAGTACACCATCGTCAATGCTGATAATGGCACGTTCTTATTACAAGCAAGAACACAAGTAGCTCCTGGAGAATTGAGTAAAGCGACGATTTTTACTGCCGGCGTAGCAAAAGAAAACGGATCTGCCACGGTTGAAGTCAAATTAAAGAGCGGAGGTGGACTTCAGATGTACGTCAATAACTCTTTGTACACCGACATTAGCACTCTTACTAATGTCACCCGAAGTATTGGGGAAAATTTGCGCGCCAGCAAGAAATCTCCAAATTGTGTGCAGGTAGTATTTCAAAGTGGTACTGGAGTGGAATTCTGTGAGGATAAGGGATTGATGTCCTTCGTGGTATCTTTAAGCAAAGACTACTTCAATAAGACGAAGGGTCTTTTTGGAACATACAACAAGGATCCCGACGATGACTTCACTTTGCCAAATGGAACAGTTTTGTCACCAGACATTACATCGAGGGACATCCACTTCAAATTTGGATTAAACTGGCAAATCACCGATCAAGAATCATTGTTCACTTATGGGCCGGGCGAAAACGTATCGACTTTTGCGAATGCAACATTCGAACCTATGTTTGTAGACGATATCAAATGGGCAGACAACAAAACTGAGGTACAAGCAAAGGAACAATGCAAAGGCGATGTGGAATGCTTGTTTGACGCTGCATCTACCAATGATGTTTCCATTGGAGTTGCAAGCAGGGAGATAAACATCAAGGTGGAAAAGGAAAACAATCAACTGAGTAACTTCCCGCCAAACTTCACAGACGTTCCTGAATGTGTTAATGTAACCCTTGGGCAAGTCTTCCACTTAACAGTCACTGCTTTTGACAACGATTCGGCCATTATCTTCAGCGTTCTAAATCTACCAATCGGGGCAAACTTCAGTTCCTCAGGGAATTATCTTAACTTTACGTGGAATGTCACATCTACTGAGAGGGTCCAGTTCACATTTGTTGCAAAAGATGAGCAAGAGGCCTCAACAAGCTCCACCCCGTGCATCAAAATGTGTGGCTGCCAAAATGGAGGTGATTGTGTGGAACCGAAGGTGGGAGACGCCCTCAACAACGACAGCAAATTCATTTACCAGGGATGTTACTGTACGGCTGGTTACACAGGACGCTTCTGCGAGAACGATCTCAACGCATGCGAGTTAAACGGAAATCCTTGTTTCCAGGGAGTGAGTTGTACAGACCACCCAGCTCCGGCGAATCTCTCGGGCTTCACCTGTGGGCAATGTCCTGTAGGCTATAATGGCGATGGCATCAATTGCCTTGATATTGATGAATGTGCGTCTAATATGAGCTGCGTGCAGGAATGTACGAACTCCCCGGGCTCGTTTCAATGTAGCTGCCGTTCTGGCTTCACTTTAAACAGCGACAAACGGAGCTGCGATGACATCAACGAATGTGTCCCGCTAGGTGCCGACTGCATGCATAAATGTAACAATACCATTGGAAACTACACTTGCTCTTGTAACGACTTCTTCAAGGTTGATCCAAGCGACACTAAGAATTGCCTTCCGGAATTTAACTGCTCACAAACCATTGGTTGCGATCAAGTTTGCTACAAAAGTGGGCGGAACGGCTCTGAAACCTGTGATTGTTACTCGGGATATAAGCTTGCAAGTGACACCAAAACTTGCGCAGATATCGACGAGTGTTCACTTCCTGACGTGAGATGTACTCAGCTATGCAATAACACTGAAGGGGGCTTCCATTGCAAATGTTCCGCAGGATTCAAACTGGAGGCAGATGGCTTCTTTTGTTCAGACATCAACGAGTGCCTAGATTCCTCGCTGTTCAACTGCTCTGATTTCCAAATTTGTGAAAACACGGATGGTAACTACGTCTGCAAATGCCTAGAGGGAATGCATCTCATAAATGGCTCATGTAAAGCACTCAAAAAAGGCGTGACGCCACCCCCTCCTACACTCGGTACACCTAAGCCGGCATCAGAGCAGGAAAAAAGCAATTCAGTGGAGCTCCGCTTGGTTGGAATGACATTAGCTCAGGGCATCCTCGCTTTAGCGTCTCTGGTCCCGGACTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EWY9	Mucin-like protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q8JZM8	Mucin-4 OS=Mus musculus OX=10090 GN=Muc4 PE=2 SV=2
Q99102	Mucin-4 OS=Homo sapiens OX=9606 GN=MUC4 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000210 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06119 all species →	NIDO	Nidogen-like	Family	Interproscan
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR003886 all species →	Domain	NIDO domain	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR051495 all species →	Family	Epithelial Barrier and Cell Signaling Protein	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13802 all species →	MUCIN 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06825	FBN1; fibrillin 1	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.