Genomic Location: NC_058078.1:2974603...2987348
NR annotation: XP_044163167.1, ribonuclease Oy-like isoform X2 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044163167.1 |
| Protein |
| XP_044163167.1 |
| UniProt accession | Description |
|---|---|
| P42814 | Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1 |
| P83618 | Ribonuclease-like storage protein OS=Panax ginseng OX=4054 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004166 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00445 all species → | Ribonuclease_T2 | Ribonuclease T2 family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036430 all species → | Homologous_superfamily | Ribonuclease T2-like superfamily | Interproscan |
| IPR018188 all species → | Active_site | Ribonuclease T2, His active site 1 | Interproscan |
| IPR001568 all species → | Family | Ribonuclease T2-like | Interproscan |
| IPR033697 all species → | Family | Ribonuclease T2, eukaryotic | Interproscan |
| IPR033130 all species → | Active_site | Ribonuclease T2, His active site 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11240 all species → | RIBONUCLEASE T2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0033897 all species → | Molecular Function | ribonuclease T2 activity | Interproscan |
| GO:0004521 all species → | Molecular Function | RNA endonuclease activity | Interproscan |
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0006401 all species → | Biological Process | RNA catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01166 | RNASET2; ribonuclease T2 | EC:4.6.1.19 | Transfer RNA biogenesis | ko03016 | deepkoala |
Transcript abundance of XP_044163167.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
