Gene detail

Detailed information of XP_044163978.1 in Acropora millepora

Genomic Location: NC_058079.1:16865311...16884804
NR annotation: XP_044163978.1, thimet oligopeptidase-like isoform X1 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044163978.1

ATGGTTTCTGACTCGGGCGAAGTGAAATTGCGCTGGGATTTGTCCACCGATGATATCCTCAAGAAAACCGAAGAGTTAATAGAACGATCCAAGAAAGTGTATGATGCTATAGGAGCACTTAAGCCTCACCAATTGACGTTCGATAACTGTCTGAAGGCATTGTGTGATGACTCAACTGAATATCATACCGCTAAGTCCAACCTGGATTTTCCTCAGCATGTCTCCACAGACAAAGACATCAGGTCAGCAAGTACTGAAGCTGACAGAAAACTTTCTGAATTTGAAGTAGAAGTCAGTATGCGAAAGGATGTTTTTGACAATCTTGTGACCTTTAAGGAGAATAATAAAGATCCATTAACACCAGAGGCCTCTAGAGTTTTGGATCGGTTAATCAAGCTGGGAAGAAGAAATGGTCTACATTTACCAGAAGAAATTCAAGCTGAAATCAAGGCAATCAAGAATCGCATGAGCAATCTGTCTATTGACTTCAGCAAGAACTTGAATGAGGAGAACACTATTCTTGAATTCAGCAATGAGGATTTAGTTGGTTTGCCAGATGACTTTATAAACAACTTAGAAAAGACAGAAGCTGGTTTGAAGAAAGTAACTCTTAAGTATCCCCACTATTTTCCAATGATAAGAAAAGCATCCAATCCACAAACCAGACAGAGAATTGAATATGCATTCAACAGGAGGTGCTTGCAAGAAAACACTGCAATATTAGAAGAGCTTGTTGAACTGCGACAAAAGATGGCCGATCTCCTTGGCTACCCAACTCATGCAAGTTACATCACAGAGCTACGCATGTCCAAAACAGCTGAGGCCGTTTCTAGTTTCCTCTCAGAATTATGTGAAAAGTTAAGACCTCTTGGGGAAGCAGATCTAAAAGTGATGCTAAAGCTCAAAGAAAATGAGTGCAAGGAGCTTGGATATGAATGTGATGGTAAAATCAATGGTTGGGACATGCGATACTACATGAACTTAGTAGAAGAGAAACATTATGCCGTGGATCACAACAAGCTAAAGGAGTACTTCCCTCTTGACATAGTCACTAAAGGTCTTTTGGATATTTATCAGGAACTCTTAGGTTTAGTTTATGAAGAAATTGAAAAACCACATGTTTGGAATGAAGATATACAAATGTTCAGTGTAAGAGACTTGGCATCTGGTGATTTGATTGGTTATTTCTACCTCGATTTGTTTCCAAGAGAAGGAAAATTTGGTCATGCAGCTTGCTTTGGATTGCAGCCTGGGTGTTCACTGCCTGATGGAAAAAGACAGCTTTCTGTTGCAGCCATGGTAGCAAACTTTACCCGCCCCACTGGTGATCATCCATCCTTGTTGACGCATCAAGAGGTGGAAACATTCTTTCATGAATTTGGTCATGTGATGCATCAGATATGTGCAAAAGCAGAGTTTGCTTTATTCAGTGGTACCAATGTTGAGAGAGACTTTGTAGAAGCACCTTCTCAAATGCTGGAAAACTGGTGTTGGGAGAAAGCACCTCTTCATCGGATGTCAGCTCATTATAAAGATTCCAGCCCAATTCCTGATGATATGCTTGATAAACTTTTAGCTGCTCGCAATGCTAACACAGGAGTTTTCAACTTAAGACAAATTTTGCTAGCAACGTTTGATCAAACAATTCACACTATGCGTAAGGCAAACACTGCAGAGATCTATGCTACACTTGCCACTGAAATTCTCTGTATACCGTCTACTCCAGATACAAACATGCCTGCATCATTCGGTCATCTAGCAGGAGGCTATGACGCGCAATATTATGGGTACCTGTGGAGTGAAGTGTTTTCAATGGACATGTTTCACACGCGATTCAAGAAGGAAGGAGTTATGAACCCGCAAGTGGGAATAGATTACAGAAAGTTTATACTGCAGCCTGGCGGAACTCTGGATGCCTTAGACATGTTGAAGAATTTTCTCGGGCGTGAGCCTAAACAAGACGCTTTTCTCGCCAGTAAAGGACTTAAAAGCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1JPJ8	Thimet oligopeptidase OS=Bos taurus OX=9913 GN=THOP1 PE=2 SV=3
P24155	Thimet oligopeptidase OS=Rattus norvegicus OX=10116 GN=Thop1 PE=1 SV=4
P47788	Thimet oligopeptidase OS=Sus scrofa OX=9823 GN=THOP1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003241 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01432 all species →	Peptidase_M3	Peptidase family M3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024080 all species →	Homologous_superfamily	Neurolysin/Thimet oligopeptidase, N-terminal	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR001567 all species →	Domain	Peptidase M3A/M3B catalytic domain	Interproscan
IPR024077 all species →	Homologous_superfamily	Neurolysin/Thimet oligopeptidase, domain 2	Interproscan
IPR045090 all species →	Family	Peptidase M3A/M3B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11804 all species →	PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005758 all species →	Cellular Component	mitochondrial intermembrane space	Interproscan
GO:0006518 all species →	Biological Process	peptide metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01392	THOP1; thimet oligopeptidase	EC:3.4.24.15	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.