Gene detail

Detailed information of XP_044164352.1 in Acropora millepora

Genomic Location: NC_058079.1:6073078...6075711
NR annotation: XP_044164352.1, E3 ubiquitin-protein ligase TRIM71-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044164352.1

ATGGATGTTCAACAACTTTTCAAGAGGCTGAAGAAGGAAGCAGAATGCCCATTGTGCTTAGAGACAGTCAAAAACCCCAAGACATTACCATGTCTTCACTCATTCTGTCTAGAGTGTCTGGACAAAATGGCAAGCTTCGCAAGAAGACAGCGACAGACAACAATCAAATGTCCCGTTTGCCAAACTTCATTTCCAATTCCCGAGACAGACACCTTCGCCAATTTGCCTTCTTCTTTTCACCTCAACCGACTGGTGGATGTCCTCGCTCTTGAAGATAGCAGCGTAAAGGCTCAGAAATGTAACAGTTGCGACGATAACAACCCGGCAACAAGCTACTGTTTTGTTTGCCAGGCCTTCATGTGCGCATCTTGTTTTCAATCTCATCAACGCTTCAAGGCTACAAGAGGTCATCGAAATGTTTTGATCGACAAACTACAAGCTCAAGATGTACAAGAGTTAATAGGAAGACCCGTGATGTGTTCACAGCAATTTCACGAAGATCAACTTCTGGAATTTTACTGTGAAGATTGCAAAGTTCTGATTTGCCTTAAGTGCAGTATTGTGAGTCATAATCGACATCTCGTTACAGACACGCAAAAAGCTGCACTAGAGCAAAAGGTGCAAATGACCGAGGCTCTGGCCAAATTGAAAGCGGAAATTCTTTTCTATGAGAGTGAAATTAAGACACAAACAGAGCTTAAAGACAAAAATGTAACTGATATTATGAACGCAGAAAAGAAGATGACAGACTTGGTCGAAGAATGGATTCGCAATTTGCGAGAACACGAGAAGAAAATGAAGCAGAAGTTTCGTGAGATTTATGAAGCGGAACAAAAACAACACGAAACTCGACTGGAAAACTTAGAGCTAATTACCACCCAACTGAAAAGCTGCGTGGAACGAGGCCAGGGTGTATTGGAAAGAAACATCAGCTCTGAAATTCTACAAACAAATCACACCATTCTTCAACGCTGTGATGAGCTGATAAATGCAAGAAAATCAGATCGTTACAAGTCGCCATATTTAAATTACTTGGTTAAAAGGAAATTTGATTCTTTCGATCACATTGTAGTCACCAAGACTGATTCCTCGATGTGCTTAGCTGAATTTGATGACAGCGAAATCGGTAAAAAGTCGAATCTTGTTGTTGTTACAAGGGATTCAGAGGGATTGCAATGTTATCAACTAGATGATCAAATCAAAGTCGACATTTTAACTGCAGAAGGTGATCACCTGAAAACTGAACTGAAAGACAGCAAGGACGGCAAATACACAGTGACATACACACCACAATGTGTTGATGAACATAGTGTTGAAATCGAAGTAAATGAACAGCCAATAACTGGCAGTCCCTTTCTTTTACAGATTCGTCAGCATGATTATCAATTTTCTTTGAAGTTTGGATCAAGAGGGTGGAGAGTAGGAGAGTTTGCTGGGATTTTTGATATTGCTGTGAGTGACAGAACTGAAACAATTGCCGTTGCAGATGTGGCTAATAAAAGAATTCAGCTGTTCAGTTTAGATGGAAAGTTTCAAATGCAGGTAGAACTTGATGGTGATCCTCTTTCCGTGGCATTCACAGACTGTGGTGACCTATTGACTTTAGTTTCTGGGAAAAATAATAAGCTTCATCTGTTCAGTGAGGGAGGTCAGTTTATAAAACACATCAATGATAAGCATCTCAAGAAACCACACCATCTTTCCATTGTGAGTGATGGTCGTTTAATCATAACTGATGTGGCAAGCAATGAAGTGAAGGTCCTTTCCCCTGACGGGAGTGACCAGCTAGTGTCCATGACTGCCCCAAACTGTGATAAATATCCAGGATGCGCTATCTATCATTCCAACAAGTTCTATGTTTCTTATCCTATGGAGCACTGTATCAAGGTATTTGACAAAACAGGAGTGTACTTACATGAGATAGGCTGTAAGGGATCTAATGATGGACAGTTTTATCATCCTTTGGGACTTGTCATTGACAAGTGTAACCGACTGATAGTGTGTGATGGAAGTAACCGAAGGCTGCAACTGTTCACCCTGAGTGGGAAGTTTTTGAGTAAATTAGAAGGAGAATACTTCAGCTATAACACACCTAGGTATGCTGCTTTAAATAATAATGGCAATCTAATTTTAGCTGGGCTATGTGAAATCTGCATTTTTGTCAATTCACGAGAGGTGTTTGATAAGAAAAGAGACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PFY8	E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2
Q9ESN6	Tripartite motif-containing protein 2 OS=Mus musculus OX=10090 GN=Trim2 PE=1 SV=1
Q9C040	Tripartite motif-containing protein 2 OS=Homo sapiens OX=9606 GN=TRIM2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000293 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR047153 all species →	Family	TRIM45/56/19	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462 all species →	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_044164352.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_044164352.1 across 54 RNA-seq samples of Acropora millepora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

54Samples

2TPM > 0

2Conditions

12.8Max TPM

0.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole larvae	30	0	0.00	0.00
branch	24	2	0.66	12.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR1929605	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929606	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929607	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929608	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929609	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929610	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929611	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929612	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929613	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929614	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929615	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929616	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929617	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929618	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929619	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929620	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929621	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929622	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929623	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929624	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929625	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929626	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929627	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929628	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929629	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929630	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929631	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929632	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929633	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929634	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929602	branch	branch	adult	not recorded	SRP056536	12.82
SRR1929584	branch	branch	adult	not recorded	SRP056536	3.02
SRR1929581	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929582	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929583	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929585	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929586	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929587	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929588	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929589	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929590	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929591	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929592	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929593	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929594	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929595	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929596	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929597	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929598	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929599	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929600	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929601	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929603	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929604	branch	branch	adult	not recorded	SRP056536	0.00

Source: CnidoSite RNA-seq expression matrices (AMILL_TPM, StringTie quantification over 54 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.