Gene detail

Detailed information of XP_044164424.1 in Acropora millepora

Genomic Location: NC_058079.1:4225905...4243133
NR annotation: XP_044164424.1, erbin-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044164424.1

ATGCGCCGATGGCCTGGACTAAAGAGTTGTTTCTCAGTGGAATGCGAGGGTTTGGAAGAAATGTCTGTGTTGGATTTGCAACACTCCAACTTGACTTGTGTGCCCACTGACATATTCAAAGCAGAGCCTAACTTAGAAGAAGTCTATCTGGATGCTAATCAGATCCGAGAATTGCCGAGAGCGCTATTTGGTCTGCAGAGTTTGCACATCCTTGGTCTGAGCGACAACGAATTGACTATTTTGCCGTCGGCGGTTGCTAACCTAGCAAATTTGCGAGAAGTTGACATTAGCAAGAATGGTATTATCGATTTGCCTGACAGTATCAAACATTGCAAGTGTTTGGAACAGTTTGATGCAAGCGTAAATCCAATTGGAAAAATCCCAGATGGTTTTACACAGCTCTTAAACTTAACCCAATTGTATTTAAATGATACATTTTTAGATCGTTTGCCATCAAACTTTGGAAGATTAACAAAATTGAAGATTCTGGAATTGCGAGACAATCATTTGAGGTCTTTACCAGAGTCCATGTCATTCTTCACAAATTTGGAAAGGTTGGATATTGGAAATAATGAATTCTTGGAATTGCCACCTGTGGTAGGATGTTTAGTGAATTTAAAAGAGCTTTGGATGGACAGCAATGGTTTGCGAGAACTTCCTCCAGAAATAGGGTTACTGCGGCAACTCTTGTTCCTGGATGTTTCCAAGAACAACCTGGAGCGTCTTCCCCCAGAACTGGAATGCCTTCAATCGCTAACTGATCTTTATCTATCCAATAACGTGTTAATGGAATTACTGGGCAACATTGGGGCCCTTAACAACCTCCAAACACTCAAAGTGGATGATAATCATCTTGTAGAACTTCCTGATAGCATAGGCAGGTTGACCAAGATTGAGGAATTGGTTATTAATCACAATGAATTAGAGAGTTTACCTCCTTCTATTGGATTATTGAAGAAGCTGCAAATCTTATATGCTGATGAAAACTTTCTGGAGGCAATTCCTTTAGAGTTAGGTAGCTGCATATCAATGACCATACTATCGTTACGAGACAACAGAATTGTGCGAATCCCTGATGACATTGGACGGATGCCGAACCTACAAGTGATAAACTTGGCATGCAACAGGTTGGAATGTTTGCCGTATACCTTTAGAAAACTGACCAGTTTAAAAGCCCTGTGGCTATCAGAAAACCAGTCCAAACCAATGGTCCCATTACAATCTGACTTTGATCACGGTACACAGTCGCACGTGTTGACGTGTTACATGTTTCCACAGCAACCTGTTTCTGAAGAAGTTTCATCGTCAGAGCAACAGGGCGATTCTTCCAGCGTTCCTGCCTCACTTCTCGAAGAACAAATAAAGCAGAGATCGTCAATCGTTTTCAATATAGATGAAGATGACTATTTGGCCAGGTTAGCCAGATTCCAGTCCCCTTATCCGAAGGATGTAAAAGATCGCGCGACCCAGTATCTGGCAAACAGACGACAGCTGCAACAGCAACAAGGGCAGGATGTCGAGGTAACACCATCAATTTTACCACCACAGCACCAACGTCACAAGCCAGCACGGCACCAATATAGGCACCCATATCAGCACCAGGACCGAGTTGATGGGCAGTCGTCTCAAGAATCGGCACGTAGACAACACCACTCACAGTCCAATCAAAAGCTAGTCCCAGTAGTTGTGCATTCATTGGATCGTAACAATGAACCCGAGCTTCTAAGGCCCCAAGAGGTGCGTACAGTTGAGGTCCCCTGGTACGAGCAACAGGTTTCGCAACCTCCGAATCAAAGTTCACGAAGAAGTTCAACAGAGACCACTGTCCACCCGGTCAGCAGTAATCACAGTAGTACAGCCAACAGTCACGCCGAACGGAGAAATTCGGCAAGAACGTCCATTGAGCAGCAGGCAGAAACACGCCCAGTGAACAGAGTACAAGTAGCGAAAGTGAGAACCATACCAGGAGATGGGCTTATCGGGGTAAGGAGAAGCATCTTGCGAGATTCATTATTCTGTTTGTCATTCCAGGGACAATCTGCGGCAGCTTCCCAAGACGAGTCAGTTCCACGCGCCCCCCCAGTCTACCATCCTCCCCCACCCTACATCCCACGGGAAAACAGAACAACCCCAGCCTCACCTTCTGAGGCTGATAGCAGACAGTCTTTAGAATCGCAACACTCGTTTCGCGAAGAAGCCCCAAGTTCGTTGTCTTCATTTGCTGGCCCTGCTAGTATTGGGAGACAGAATAGTCGCTCCACAGGAACACCAGAAACCGAACAGGCTGGCGAGATGTGCTCGTTTAACGAACAAGAGCCGAGTATTCTTCAAGGTCCCTTGAGACCGCCGTCGTATTACGAAGCGACGAACCATTTGAACAGGATATCGGGACTGGGAAATTTTGTGCATCACATCTGGTCCGCTACGCAGGATGGGGTACTGGACACGCGGCCAATGTTGAACGGTAATCATGGGAAACAGAGATCACCTCCACCGCAGTACACAGAGCAACCGGAAATGATTAATGAACTTCCGGCGCGTTTAAGTTTATCGGAACCGGAAGTGTCTTCTAACTCCGGTAGACAATTAGTTGTAAGGGTTAACCCGGAGGATGCGCAAAGATTTGAAAACAGAGTACGGCAGCTTCAGCGCGAGAGAGCGATGGAACGCAGAGAAATGGAAAACAATGGAGGTCGGAGAGATGTCGGAGATAATCGTCGAGCTCAGCCGCAAGCGACTGCTTTTGTTCCTCGCGTTCGGCTCCAACGAAGTAACTCGTCGGATTCGCGATCCTCGCAACAATCTTTGCACTCTACGCATTCTTCGCAAGACGTCGATGAAGAGCCGTTGGACAATGATCCCAGTGTAGAATTGCATCGTGTAGAAGTTTACAAGAATCCTAATCTTGGATTTAGCATCGCTGGAGGAATCGATTCAACTGCTAATCCTTTTCATCCAAATGACAATAAGAGTATTTATGTTACAAAAGTTCAGCCCGATGGTCCCGCAGCCTACGGGCTTGTTCCCGGCGACAGAATTCTGGAGGTCAACGGGATTAATCTTCGACGTGTAACACACGAGAAAGCAGTTCTATTTTTAAAGAACAACCAAGTCGTTAATTTACTCGTTGCAAGAGACAAGGAGGCGCCTTCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80TE7	Leucine-rich repeat-containing protein 7 OS=Mus musculus OX=10090 GN=Lrrc7 PE=1 SV=2
P70587	Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus OX=10116 GN=Lrrc7 PE=1 SV=2
F1MCA7	Leucine-rich repeat-containing protein 7 OS=Bos taurus OX=9913 GN=LRRC7 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003258 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050614 all species →	Family	Synaptic Scaffolding LAP/MAGUK Families	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23119 all species →	DISCS LARGE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0009790 all species →	Biological Process	embryo development	Interproscan
GO:0014069 all species →	Cellular Component	postsynaptic density	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0045211 all species →	Cellular Component	postsynaptic membrane	Interproscan
GO:0097120 all species →	Biological Process	receptor localization to synapse	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0098887 all species →	Biological Process	neurotransmitter receptor transport, endosome to postsynaptic membrane	Interproscan
GO:0098968 all species →	Biological Process	neurotransmitter receptor transport postsynaptic membrane to endosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_044164424.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.