Genomic Location: NW_025322621.1:291368...301547
NR annotation: XP_044165437.1, uncharacterized protein LOC122949389 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044165437.1 |
| Protein |
| XP_044165437.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000007 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00059 all species → | Lectin_C | Lectin C-type domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001304 all species → | Domain | C-type lectin-like | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR050828 all species → | Family | C-type lectin and matrix domain-containing protein | Interproscan |
| IPR016186 all species → | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR003609 all species → | Domain | PAN/Apple domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45710 all species → | C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180 | Interproscan |
XP_044165437.1. This gene does have a gene model — the search simply returned no hit.XP_044165437.1.Transcript abundance of XP_044165437.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
