Gene detail

Detailed information of XP_044166370.1 in Acropora millepora

Genomic Location: NW_025322636.1:526996...531986
NR annotation: XP_044166370.1, volume-regulated anion channel subunit LRRC8A-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80WG5	Volume-regulated anion channel subunit LRRC8A OS=Mus musculus OX=10090 GN=Lrrc8a PE=1 SV=1
Q4V8I7	Volume-regulated anion channel subunit LRRC8A OS=Rattus norvegicus OX=10116 GN=Lrrc8a PE=1 SV=1
Q8IWT6	Volume-regulated anion channel subunit LRRC8A OS=Homo sapiens OX=9606 GN=LRRC8A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12534 all species →	Pannexin_like	Pannexin-like TM region of LRRC8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021040 all species →	Domain	LRRC8, pannexin-like TM region	Interproscan

PANTHER

No PANTHER signature was detected for XP_044166370.1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for XP_044166370.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22037	inx, zpg, ogre, shakB; innexin	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_044166370.1 across 54 RNA-seq samples of Acropora millepora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

54Samples

33TPM > 0

2Conditions

583.0Max TPM

50.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole larvae	30	18	34.84	164.17
branch	24	15	69.31	583.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR1929623	whole larvae	whole larvae	adult	not recorded	SRP056536	164.17
SRR1929633	whole larvae	whole larvae	adult	not recorded	SRP056536	110.11
SRR1929611	whole larvae	whole larvae	adult	not recorded	SRP056536	88.53
SRR1929634	whole larvae	whole larvae	adult	not recorded	SRP056536	87.15
SRR1929615	whole larvae	whole larvae	adult	not recorded	SRP056536	76.42
SRR1929612	whole larvae	whole larvae	adult	not recorded	SRP056536	74.23
SRR1929614	whole larvae	whole larvae	adult	not recorded	SRP056536	71.72
SRR1929632	whole larvae	whole larvae	adult	not recorded	SRP056536	66.24
SRR1929630	whole larvae	whole larvae	adult	not recorded	SRP056536	45.96
SRR1929626	whole larvae	whole larvae	adult	not recorded	SRP056536	43.08
SRR1929613	whole larvae	whole larvae	adult	not recorded	SRP056536	42.94
SRR1929631	whole larvae	whole larvae	adult	not recorded	SRP056536	39.36
SRR1929624	whole larvae	whole larvae	adult	not recorded	SRP056536	37.80
SRR1929621	whole larvae	whole larvae	adult	not recorded	SRP056536	24.50
SRR1929622	whole larvae	whole larvae	adult	not recorded	SRP056536	24.00
SRR1929606	whole larvae	whole larvae	adult	not recorded	SRP056536	21.66
SRR1929605	whole larvae	whole larvae	adult	not recorded	SRP056536	18.46
SRR1929616	whole larvae	whole larvae	adult	not recorded	SRP056536	8.94
SRR1929607	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929608	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929609	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929610	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929617	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929618	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929619	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929620	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929625	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929627	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929628	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929629	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929604	branch	branch	adult	not recorded	SRP056536	583.03
SRR1929601	branch	branch	adult	not recorded	SRP056536	173.30
SRR1929600	branch	branch	adult	not recorded	SRP056536	131.99
SRR1929582	branch	branch	adult	not recorded	SRP056536	117.54
SRR1929589	branch	branch	adult	not recorded	SRP056536	113.60
SRR1929583	branch	branch	adult	not recorded	SRP056536	108.73
SRR1929602	branch	branch	adult	not recorded	SRP056536	92.58
SRR1929581	branch	branch	adult	not recorded	SRP056536	90.71
SRR1929585	branch	branch	adult	not recorded	SRP056536	70.28
SRR1929584	branch	branch	adult	not recorded	SRP056536	49.33
SRR1929591	branch	branch	adult	not recorded	SRP056536	39.77
SRR1929592	branch	branch	adult	not recorded	SRP056536	30.37
SRR1929596	branch	branch	adult	not recorded	SRP056536	23.14
SRR1929597	branch	branch	adult	not recorded	SRP056536	21.15
SRR1929598	branch	branch	adult	not recorded	SRP056536	17.87
SRR1929586	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929587	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929588	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929590	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929593	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929594	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929595	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929599	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929603	branch	branch	adult	not recorded	SRP056536	0.00

Source: CnidoSite RNA-seq expression matrices (AMILL_TPM, StringTie quantification over 54 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.