Genomic Location: NW_025322636.1:752161...757632
NR annotation: XP_044166406.1, uncharacterized protein LOC122947173 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044166409.1 |
| Protein |
| XP_044166409.1 |
| UniProt accession | Description |
|---|---|
| Q80WG5 | Volume-regulated anion channel subunit LRRC8A OS=Mus musculus OX=10090 GN=Lrrc8a PE=1 SV=1 |
| Q8IWT6 | Volume-regulated anion channel subunit LRRC8A OS=Homo sapiens OX=9606 GN=LRRC8A PE=1 SV=1 |
| Q4V8I7 | Volume-regulated anion channel subunit LRRC8A OS=Rattus norvegicus OX=10116 GN=Lrrc8a PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001346 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12534 all species → | Pannexin_like | Pannexin-like TM region of LRRC8 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036433 all species → | Homologous_superfamily | Elongation factor EF1B gamma, C-terminal domain superfamily | Interproscan |
| IPR021040 all species → | Domain | LRRC8, pannexin-like TM region | Interproscan |
XP_044166409.1. This gene does have a gene model — the search simply returned no hit.| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003746 all species → | Molecular Function | translation elongation factor activity | Interproscan |
| GO:0006414 all species → | Biological Process | translational elongation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22037 | inx, zpg, ogre, shakB; innexin | - | Transporters | ko02000 | deepkoala |
Transcript abundance of XP_044166409.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
