Genomic Location: NW_025322654.1:434065...437943
NR annotation: XP_044167090.1, eukaryotic translation initiation factor 3 subunit M-like, partial [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044167090.1 |
| Protein |
| XP_044167090.1 |
| UniProt accession | Description |
|---|---|
| A7SPX9 | Eukaryotic translation initiation factor 3 subunit M OS=Nematostella vectensis OX=45351 GN=v1g192238 PE=3 SV=1 |
| Q6DK91 | Eukaryotic translation initiation factor 3 subunit M OS=Xenopus tropicalis OX=8364 GN=eif3m PE=2 SV=1 |
| Q7L2H7 | Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens OX=9606 GN=EIF3M PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005466 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01399 all species → | PCI | PCI domain | Domain | Interproscan |
| PF18005 all species → | eIF3m_C_helix | eIF3 subunit M, C-terminal helix | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000717 all species → | Domain | Proteasome component (PCI) domain | Interproscan |
| IPR040750 all species → | Domain | eIF3 subunit M, C-terminal helix domain | Interproscan |
| IPR045237 all species → | Family | Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7 | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15350 all species → | COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0002183 all species → | Biological Process | cytoplasmic translational initiation | Interproscan |
| GO:0005852 all species → | Cellular Component | eukaryotic translation initiation factor 3 complex | Interproscan |
XP_044167090.1.Transcript abundance of XP_044167090.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
