Genomic Location: NW_025322656.1:379259...389737
NR annotation: XP_044167167.1, very low-density lipoprotein receptor-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044167167.1 |
| Protein |
| XP_044167167.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000139 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00057 all species → | Ldl_recept_a | Low-density lipoprotein receptor domain class A | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050685 all species → | Family | Low-density lipoprotein receptor | Interproscan |
| IPR002172 all species → | Repeat | Low-density lipoprotein (LDL) receptor class A repeat | Interproscan |
| IPR036055 all species → | Homologous_superfamily | LDL receptor-like superfamily | Interproscan |
| IPR023415 all species → | Conserved_site | Low-density lipoprotein (LDL) receptor class A, conserved site | Interproscan |
| IPR000998 all species → | Domain | MAM domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24270 all species → | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
XP_044167167.1.Transcript abundance of XP_044167167.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
