Genomic Location: NW_025322778.1:185047...187475
NR annotation: XP_029203941.2, uncharacterized protein LOC114967999 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044169302.1 |
| Protein |
| XP_044169302.1 |
| UniProt accession | Description |
|---|---|
| O54786 | DNA fragmentation factor subunit alpha OS=Mus musculus OX=10090 GN=Dffa PE=1 SV=2 |
| O00273 | DNA fragmentation factor subunit alpha OS=Homo sapiens OX=9606 GN=DFFA PE=1 SV=1 |
| O70302 | Lipid transferase CIDEA OS=Mus musculus OX=10090 GN=Cidea PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006402 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02017 all species → | CIDE-N | CIDE-N domain | Domain | Interproscan |
| PF09033 all species → | DFF-C | DNA Fragmentation factor 45kDa, C terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003508 all species → | Domain | CIDE-N domain | Interproscan |
| IPR027296 all species → | Homologous_superfamily | DNA fragmentation factor 45kDa, C-terminal | Interproscan |
| IPR015121 all species → | Domain | DNA fragmentation factor 45kDa, middle domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12306 all species → | CELL DEATH ACTIVATOR CIDE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006915 all species → | Biological Process | apoptotic process | Interproscan |
| GO:0042981 all species → | Biological Process | regulation of apoptotic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02310 | DFFA, DFF45; DNA fragmentation factor, 45 kD, alpha subunit | - | Apoptosis | ko04210 | deepkoala |
Transcript abundance of XP_044169302.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
