Detailed information of XP_044170023.1 in Acropora millepora

Genomic Location: NC_058067.1:4637314...4642047
NR annotation: XP_044170023.1, uncharacterized protein LOC122954059 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009448 (this species only)

 Pfam domain
No Pfam domain signature was detected for XP_044170023.1. This gene does have a gene model — the search simply returned no hit.
 InterPro
No InterPro signature was detected for XP_044170023.1. This gene does have a gene model — the search simply returned no hit.
 PANTHER
No PANTHER signature was detected for XP_044170023.1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
No Gene Ontology signature was detected for XP_044170023.1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_044170023.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_044170023.1 across 54 RNA-seq samples of Acropora millepora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

54Samples
11TPM > 0
2Conditions
1,393.8Max TPM
175.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole larvae 30 8 276.32 1,393.84
branch 24 3 49.20 458.24

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (AMILL_TPM, StringTie quantification over 54 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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