Gene detail

Detailed information of XP_044170178.1 in Acropora millepora

Genomic Location: NW_025322834.1:88720...108235
NR annotation: XP_044170175.1, uncharacterized protein LOC114967734 isoform X1 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044170178.1

ATGGGTGGAACTGTAATAAAAAAGATAAAACAGGAATCTGGAGCGAAAATTGTGTCGACGCCAAAGAATGAGGATGGGTTTATAGTCACTGGTAATGAAGAGCAAAGAGCACACGCCAAGAGACTTATATCACAAAAAGTGGATGGAGCAAAACTGACGGAGAAGGAAAGGCAGCTCAACAAAGACTGTTATTTTATAGATGGATGGAATCTCCCTGCACACTGTCAACTCAAACTCGAGCAGATAGCAAAAGAGGATGGTATTGATCTTCCAGAAACTCTTGGGCAGTACCGAATAAAACCAGCCAAATCTTATGATGCACAGGAATCTTGTTGTTCAAATGATGACCCAAGCTATATGTCGAAACTCGAGAATGACACTTTGGAATCCCTGCGTAGGATTAAAAGAGAGATGAAGACGAAGAAGCAGCTTAAGGCTGATATGTGGTGTCACTTTGGCATGTTTATCATCCGCCGACCTCTCGAAGGAGATGAAGCTGCTGATGGGGAATACTCTACTAAAGAGGCTTCGAGCATGTTGCAAGAGAATCGTTGGAGAGGCGCATTTAAAGGAGGAGTTAACCTTAACGAAATAATCTTAAAAGATCATCTTCATGCCTTCGACAAAACGCCTGCAGAATACGGAGAGTATTCATCAAGATATGACTTAACATTTTCTATGCCGAATGGTCGGCAAATATTTTTAAAGCTATGGGCAACAAAGAAGAATCTTGGCAAAAGGCTGGATGACATCCCACTCCCGTCATGTGACCTAAAGAACGTACTGGAGGAAATACACTTTAAAGATGAATTAACACGGTTACGATGCCGAGGGTGGCTATTGCTACCACCTAGAAGATGTATGCGAGCAGACATTTTGTTTCCTGGCTGTGACTTTGATTGCAGACTGACCATAACCGGGCATAATGACAGTGCTTTTGAATGCGACCATTTGCCTAGTGAAGAGACAAGACGTATCTTAACAAGCTACCTCTCTGAAGTGACATTTGCAGATGAAGATGACTTTGGGCTTCGCCTCCCAAAAAGGAATATGCCTGATGGATTTCATCTATTTCATATGCGATGCTGTGAAAGATCTCTGTATGGATTCATGCCGGGATTTACAATTGTGCTTTCGAAGGAAATCTCACGGGACATCAAAGCGGAGAGCTCTAGAGTTTCGACCGCCTTTTATTTACTTTGTGACGAATGGGAAGAGTTACTTCATAAAGGCGGATGGGAACCGGAAGCTGTGGTGAAAAAACTTCCTGATTTCCTCCGATTTGTGAAGAAAGTGCAAAGTTTTGTGGTTTGCGAAATGAAACAGACGGGTCTTTCTCCAACAATCCCTGCCGAAATTCTTGCGCGAGGTCCCTCAGCGCTGGAGGCCTACAACAAGGCTCTTGCTGATGGAAAAACGGCAGTCAAAAGGGTTCCAATAATGCTGATAGGACAACACAGAGCTGGAAAGACCAGCTTAAAGAAGTCATTAAGAGGGATATGTTTCGACCCAAAGGAAGGCAGTACTGTAGGTATCGATGTGGATCCGTCGCATTTCAAGGTGACAACCGAAACGTGGAAAACAGGGACAACGGAGAAGGACCAAAATCATGATGCGGCGATTTCCTTTGATCGTCATGCAGCAATGTTGGTTGTAGAGAAGCTAAAGAGGGATGGTAAGAGTTTCTTGGTGGAAGATAGTCTGGAAGAAATACAAAGTACCTTAGATTCTGAAGTCACTGAAATACCAAAGCTACCTAGTCCCAACGAAACATCAAGAGATACCGAGCACGTTGAAGTACCCAGCGAAACAAGAGAAACCCTCAGCGGAGATGCCCACCAGGTACCACCCAGGCCATCCGGAGAGAATTCAGGTGTACCTGATCGTTTTCCTCGATGCGTTCCGGAAGATGTGGCAGAGGCAACTGAAACGTTACTTCAAGGTGGATGGGAGGATGTTAGGGAACACATTTACTCAACTCTGTGGGATTTTTCTGGAGAGTCAGTATATTATGTCACCCACCCCCTCTTTCTGACAGCGCGAGCAATCTACTGTTTGGTTTATGACCTTAGTCTGAAACCTGAAGATCTGGCCCCACCCCTGGTGAAACAAGGAGTGTATAACCAATTCCCGGAAGACTTCAATCTGAAGACTAACTTGGATTATCTTGATTTCTGGATGAGATCTGTTGCTTCCCTAGCCAGTTTTGACGAGAACAGAGGCCTTTCACCTAAATCAGAGAGTCCCAGAAAGAAGCTTCCTGCAGTTTTCCTGGTCTGCACCCATGCTGATACTCCCTATTGCAAGCGCAATCCTCAGGAATTGGCCTATAAAGTCCTTGGTTATCTACGACAAAAGCCATCATATGGTAGCCACCTCGTTGGTGTGTTCGTCGTGGATAACACAAAGTCAGGTACCAAGTGTGAGTGTCAAGAAGTCGTGCGTTTGCGTCAAGAAATTCTCGCTCTTGCCAAAAATTTACCCCACACCAACGAATCCATCCCAATTAAGTGGTTAAAATTTGACAAGACTCTTAACGCACTAAGGGAAAAGGGGAACAACTGGATTTCCTTGGAGTCAGCAAAAGTAATTGCGTCAAAAGACTGCAATATTGTTAACGACAGAGAGTTCGAGACACTGATGAACTACTTGCATGATTTGCGAAGACTGGTTCATTTTGATGACTCACCAACGTTGAGCAAGTTAGTGGTCTTGAATCCTCAGTGGTTAATAGACCTGTTTAAGAAAGTAATAACCGTGCAGCCGGCTTGGGAATGCAAAGAAGAGAAATTCGTAGAACTATGGGGCAAGCTTGAAGAAGAAGGAATTCTGGATGAACAACTTTTGACGCATATGTGGAAACCTTTGTTAGGAGACAAAGACACGTACGAAAGTCTCGTTGATGTCATGGAGAAATTCAGTTTGCTGTGTTGTTGGCCATCGGGTACTTCTGAGAAGAAGAACTACCTGGTGCCATCGATGTTGAGGTCACATCCACCAGACGAGATTGTCGAGCTTGTTGCGTCTGCAACAGTGCCATCTCTATTTCTCAAATTCGAAACTGGTCATGTCCCTACTGGCTTTTTTCCCCGCTTGGTCTTGAAGTTCTTTCAGTGTGGCGAGTTATGGAAGCAAGCCAAATCTAAGTTTTTCCATAATTTTGCTAGATTCTTCAGTTCTGAAGATGAAAACTGCTCTGTGATCCTTCTCTGCCACTCCTCATTCGTTGAGATTGCTGTTCACAAGGCGAATTCCACCCTGGCATTGGCCGGTGAGCAGTCGTCAGTGATGGCCCTGTCAACAGATTTCTCATGCCACAGTGTTGCCACTGAAGTCACTTGTGCTAGTGCCGTTCATAGACGGCTTCGCTTGATGATGGAGTGCATGCTCAATGAGTTCAGCTGGCTAAGGGATATCAAATATGAAATGTGTGTCCTATGCCCAGTCTGTTGTAACGGAGGTGCCGTCAACTACTGCCCAACTCATAAGAAAAAAGGATGCAAAGAAGAACAATGCCTTCACTTCTTCTCTATTTCCGAGTTGTCCAGTTACAATGAAAGTATTTTTTGTCACAGGTCTGCCTCGGCGCCAGACACTCAAGTTTCGGTTATGCAGTTTTCACACTTTTATGATCTTTCTGGACACCAGCTAGCGATCGAGTACAGAAGATCTTCAGGAATCGAAGAAAGTGCAATTTCTTTGTCTGATATGGTCAGAAAATCCCTTTTGTCCCAATCATTTGATTCCAAAGAAATTGTGAATCAGTTCAGAGGGAGTCTCAAGCCTCAAGCCTCTCTGGAAAAGCCAGACGATGAGACTAAGAATTGGATCCGCTGTTTGGCAAGGGAGGCTAACCTATCAGGTAGACTCGACGTTGTCAAATGTTTGAGGAACATTTCACCTGCTGGAACTACTGGTCCGCTGTTATCTGAAAATCTTAATGTGAGAGCAATTCCTATGAAGAAGTATAGACAGCTTACTATGGCCTTGAGTGGGGGAGATGATTGGAAGTTAGTTGCTGAGGAACTGGGCTTGCCACCCCTCGAGATTCGCTTCCTTGACAACCGCACCACGAACCCAGCTGATGTTGCATTGTCGTATGTCGCAAGGCAACGACTGTTTACTGTAGGGAATCTTTATGATGTCCTCGCCGCTTGTAACCTCCCTTTGATAGCCGATGATCTCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2
Q5S007	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47679 all species →	PROTEIN TORNADO 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10798	PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4	EC:2.4.2.30	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.