Genomic Location: NW_025322865.1:21913...29675
NR annotation: XP_044170489.1, LOW QUALITY PROTEIN: volume-regulated anion channel subunit LRRC8A-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044170489.1 |
| Protein |
| XP_044170489.1 |
| UniProt accession | Description |
|---|---|
| Q80WG5 | Volume-regulated anion channel subunit LRRC8A OS=Mus musculus OX=10090 GN=Lrrc8a PE=1 SV=1 |
| Q8IWT6 | Volume-regulated anion channel subunit LRRC8A OS=Homo sapiens OX=9606 GN=LRRC8A PE=1 SV=1 |
| Q4V8I7 | Volume-regulated anion channel subunit LRRC8A OS=Rattus norvegicus OX=10116 GN=Lrrc8a PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001383 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12534 all species → | Pannexin_like | Pannexin-like TM region of LRRC8 | Family | Interproscan |
| PF00656 all species → | Peptidase_C14 | Caspase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015917 all species → | Domain | Peptidase C14A, caspase catalytic domain | Interproscan |
| IPR029030 all species → | Homologous_superfamily | Caspase-like domain superfamily | Interproscan |
| IPR002138 all species → | Domain | Peptidase C14, caspase non-catalytic subunit p10 | Interproscan |
| IPR032675 all species → | Homologous_superfamily | Leucine-rich repeat domain superfamily | Interproscan |
| IPR001309 all species → | Domain | Peptidase C14, p20 domain | Interproscan |
| IPR021040 all species → | Domain | LRRC8, pannexin-like TM region | Interproscan |
| IPR011600 all species → | Domain | Peptidase C14, caspase domain | Interproscan |
| IPR033139 all species → | Active_site | Peptidase family C14A, cysteine active site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47901 all species → | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008234 all species → | Molecular Function | cysteine-type peptidase activity | Interproscan |
| GO:0004197 all species → | Molecular Function | cysteine-type endopeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
XP_044170489.1.Transcript abundance of XP_044170489.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
