Genomic Location: NW_025322895.1:2922...4130
NR annotation: XP_044170634.1, NLR family CARD domain-containing protein 3-like, partial [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044170634.1 |
| Protein |
| XP_044170634.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011707 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13516 all species → | LRR_6 | Leucine Rich repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR032675 all species → | Homologous_superfamily | Leucine-rich repeat domain superfamily | Interproscan |
| IPR027038 all species → | Family | Ran GTPase-activating protein | Interproscan |
| IPR001611 all species → | Repeat | Leucine-rich repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24113 all species → | RAN GTPASE-ACTIVATING PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005096 all species → | Molecular Function | GTPase activator activity | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
XP_044170634.1.Transcript abundance of XP_044170634.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
