Gene detail

Detailed information of XP_044170775.1 in Acropora millepora

Genomic Location: NC_058067.1:5794371...5816882
NR annotation: XP_044170775.1, catenin alpha-2-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044170775.1

ATGAGTAGAGGAACAACCACAGCAAGTGGTGATATCACTTTTGAAAAGCATAAAATGAAATGGGACCCAAAAACCATGGAAATTCGAACACATTCAGTCGAAAAGACACTCGAACCTCTTGTTCTCCAAGTGACGACTTTGGTCAATCAACCGAAGAAAAAAGGAAGCAAGCTGGGAAAATCGAAGAATGCTCACAAACTTGCGCAAGACATCGAAGATGCAACAGCACGACTTATTAAAACTGGGGAAGACATTGCTCAAGAATTTCCTGAGATCAGAGAGGAGATGTTAGCAGCATGTAAAGATTGCAGAGGTGCAGGTGATTCTATGCGCACAGCAGCCAAAGATTTCGCTGACGATCCTTGTGCTTCAGCTAAGAGAGCCACCATGGTGAAAGCAGCTCGTGCTTTGCTGTCATCTGTCACAAGGTTATTATGTGTTGCAGACATGGCTGATGTGTATCGACTTCTTGCATCACTGAAATTGGTTGAAAAGAGACTCAAAGAATTGGAAAAGGCCAGCAACACTGCAGACTTGTTAAATTCCTTTAAAAGTCTTGGAAATGACCTGATGGACTTGGCCAAACTCTCTGGAAAGAGGCAGGCAGATTTGAAAGACCCTCAGAGAAAAGATGAAATGGCAGCAGCAAGGGCTACACTAAAGGAATCCAGCAAAATGTTGCTTTCTTCATCCAAGGCCTATGTGCGTCACCCTGAAGTAGCCTCAGCAAAGGCCAACAGAGATTTTGTGATGAAGCAGATGTCAGAGGCTGTCAATGCCATCTCAGGTGCAACTCAGGCTACTGGTACAAGTGGACCACACCCACTGGAAACCCCAGGGGCTCTGGCCTCAGCCTTAGATGACTTTGATTCTCAAATTGCAATGGACCCCAGTTCTTACTCTGAGAAGAGAACGCGTCCCACATTAGAACAACGACTGGAAAGCATCATCAGTGGAGCTGCTCAGCTGGCTGATTCCATCTCCACACGAGATGATACTCGTGACAAGATCATTGCTGGTTGTAACGGAGTACGACAAGCCCTTCAGGACCTTCTCTCAGAGTACATGGATCATGCTACGGGAAAGAAGAAGGCTACACCTGGGGGACCTCTTGATCAAGCACTTGAAAGGATGTGCAAGAGAACAAGAGAATTACGTGGACAGTTACGCCGTGCAGTTGTGGATCATGTATCGGATTCTTTCTTGGAGACCACCATGCCGTTGCTTATGTTGATTGAGGCTGCTCAAGCAGGAAATGAAAGGGAAGTGGAGGAATGCGCCAAGCTGTTTACTGACCATGCTGCCAAACTGGAAGAGGTGGCCAATCTTGCTTGTACAATGTCAGTTAACCCTGAGAAAGTGAAGATGGTAAGACTGGCAGCCAAACGGCTGCAAAATCTGTGTCCTCAAGTAATAAACGCTGCCCGCACTCTTGCTGCACGTCCTCACAGTAAGGTAGCACGCGAGAACATGGATGTCTTCAAAGAGGCCTGGGAGCAGCAGCTGCAAGTCCTTACTGAAGCGGTAGATGATATTACCAGCATTGAGGAGTTTCTGTCGACCACAGAGGCTCATATTTTAGAAGATGTGAACAAATGTGTCCAAGCTTTGCAAGATAAAGATCCAGAAACAGTTGACAGGACAGCTGGACAGATCCGTGGCCGCACCGCCAGGCTAGAAGATGTGGTTACTGCAGAAATGGAGAATTACCAGCAAGGACCTTACACTGACAATGTGTTTAGGGCTGTTTTGATTATGCATAATGAAGTGGTGCCTCACTTTGCTCAGGTAGTTGAGCAATCAGTGACAACTCTTGCCAAAGATCCTCATGGGGAAGTTGATGAGGCTCAGTTCATTGATGCTTCCAAGCTGGTTTATGAAGGCGTCCGAGATATCAGGAAGGCAGTACTTGCTGGAAGAGGACATGATGTGGTAGGAGTTGGGGAAGAGATTGTTTTGGAGGATAACTCTGCTGAGCTGTTTGCAGAGGCTCAAGCGCGTGCAAGGGAACAAGCAGCTTACGAACAACTCAAAGCCAGTGGGAAGGTACAGTTTGAGGTGCGTGCAGAAGGAGGAGAGGATGAAGGTGGAATGGGCGTCTCATCAATTAAGATCAACGGTGTGGAACATTGTCCCAAGAAAGTTGGACACAATGTGGTGGTTCTTGATCCAATTGGTGAAGTTGTCGCAGCAAAGAATTTCAACACAAACTCCGGAGAGGGTCCTGCCATGAAACAGTTCTTGGATCAACTCCCAGAGGATCACGTTGTTCTTGTCGCATCTCAAGGAGTCAGTGGTAGAGAACAGGGGAACAATGTAGCTGCCGCTGCACCAGCGCTCGAGCGTCTTGGGGCGCAAGGACCAATTGACCCAGGCTATCACGGATCCTTCGCCTTTTCTGGCTGCACTGGTAACGCGCCAAGGTCTTACGCCAGAGCGGAAGTGCGTCCCAGATACCATGGACCTTCAATCGTGGCTCAGCTAATTCCAACTCCTGCAGCACAGAAAGGTTTGGCAAAAGTTGCCATCGTTGCTGAAGGAGAGGACGATCCAAAGGGAACAGGCCGAACATCTATCAAAGTTAATGGAATTGAGCGATCACCTAAGCTTCGAGGACACAATATTGTGGTTTTGGACAGTGAGAGAAACTTCGTCATGGCTGCGAATTTCGACACGGCTGATTCCTCTAAGGGAGAGGGGGTGAAGATGGCCAATTTCTTACAACAGCTACCTCAGGAGAGGATAGTGCTGATTGGTACCCAAGGAAGTACTGGTACCTCAGTGAACGACGCGAAAGAGGCTCTTTATGAGTTAGGGGCTTCTGGAAATGTTCACCCAGGGTTCCATGGCTCGTGGGCCTTTATCGGTTACACAGGCCCTGAAAAGGTCAAATGGACTAAAGTGGCAAGTCAACCGCGGTACAAAGGACCAGCGGTTATTGAGGAAATGATCACCAGTCCATTAACAGAAGAACAAGAAATAAGTACAGTGACTGCTGGAGAATCCGAGTATGAACCAGTATCTGATTACGAAGGAGAAGGAGCCGTGTCGGACTACGACGCACGGTCGGAATTTGACGACACAGATGATTGGGAGAAAGATAAGAGCATGTCCAAGAGAAGTGCTAGGTCGTTGATGAGAGCTTTGCCGGCAGAGGAAAAAGCGAAGATTGAGAAGCTGACGGAAGGACTTCAACTAGAGAAGAAGAAACTGGAGAGAGAATTGACCAAATGGGACGAAAGTGGAAATGACATCATTATCCTGGCAAAGAAGATGTGTATGATGATGATGGAGATGTCAGATTTTACAAGGGGAACTGGGCCATTGAAAACAACAATGGACGTTATTGACGCCGCAAAGAGAATTGCTAAGGCTGGAGCAAAGATGAACCAAAAAGCATCCGAAATAGCAGAGCGGTGTCCCGTTTCGAGCTCCAAGAATGACTTGTTGGCATATATTCAGCGTATAGCGCTGTACTCTCACCAACTTACCATCACAGCGCGAGTCAAAGCTGATGTGCAGATGATCAGTGGAGAGCTTGTTGTGTCAGGGTTGGACAGTGCCACATCTCTGATCACAGCTGCTAAGAATCTTATGAACGCCGTCATCTCAACTGTCAAGGCTTCCTACGTCGCCAATACCAAGCATAAATCTGGAGAAGCAAGGACTCCTAGTGTCACATGGCGCATGCGTGCTCCGGAAAAGAAACCGCTTGTTAACCTTGAAAAAGATGACCGCGTACCACAGCTACAGCGAGCAGAGAAAGTCAAGCAAGAGTCACCGATGCAAGTGTTGTCGGAATTTGGCACCTCAGAGGTGAAACGACAACCCGACTTCTACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R416	Catenin alpha-2 OS=Pongo abelii OX=9601 GN=CTNNA2 PE=2 SV=3
P30997	Catenin alpha-2 OS=Gallus gallus OX=9031 GN=CTNNA2 PE=1 SV=1
P26232	Catenin alpha-2 OS=Homo sapiens OX=9606 GN=CTNNA2 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003884 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01044 all species →	Vinculin	Vinculin family	Family	Interproscan
PF15711 all species →	ILEI	Interleukin-like EMT inducer	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006077 all species →	Family	Vinculin/alpha-catenin	Interproscan
IPR039477 all species →	Domain	ILEI/PANDER domain	Interproscan
IPR001033 all species →	Family	Alpha-catenin	Interproscan
IPR036723 all species →	Homologous_superfamily	Alpha-catenin/vinculin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18914 all species →	ALPHA CATENIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0008013 all species →	Molecular Function	beta-catenin binding	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05691	CTNNA; catenin alpha	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.