Gene detail

Detailed information of XP_044172343.1 in Acropora millepora

Genomic Location: NC_058067.1:26890471...26921625
NR annotation: XP_044172343.1, NLR family CARD domain-containing protein 3-like [Acropora millepora]
Species abbreviation AMILL · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044172343.1

ATGGCATCGTGTTCAAGGCAGCCTCAAGAACATGATAGAACCATTAAAGTCACCATTTTGGCTTCTGAGTGGGGATCCAGTAAGGGTGGACTTTCCACCATAAACAGAGAGTTGGCCATTCAATTAGCCAAATATTATGACTGTAAAGTCACTTTCTTTTTGTTAAAATGCTCTCATGAAAATAAGGAAGAAGCAAGGTGCCATAATGTATCCATTGTTGAAGCAGAGAGAAAACCAGGGTATGAAGAACTGGATTGGCTCAGCTTTCCACCACAAGATTTACAGATAGATATTGTCATTGGTCATGGTGTGAAACTCGGAAAACAGGCTCAAGTTATCCGCAAATATCACAAATGCAAGTGGATTCAAGTGGTACACACAGACCCAGAGAAACTAGGAATGTTCAAATGTTATGAGAATCCAATCTCAAAGGGAGAACAAAAGCACCATGTTGAGGTAGAACTTTGTCAGATGGCTGATTTGGTTGTTGGAGTGGGACCCAAGTTGACGGAAGCCTTCCGCAGGTACCTGCGCTGGTGTAAGAAAGATCAAGATGTCTTGGAGTTCACTCCTAGTGTTTTCACTGATTTTGCCAGAGTTCAACAAGCTCTTGAGGAAAGAAAACCCCGCAGTGTTTTGATATTTGGTCGTGGAGATGATGAAGATTTTGAGTTAAAGGGCTATGATATTGCAGCAAGATCTGTTGCTGCAGTGCTTGATACAGATCTGGTTTTTGTGGGAGCACCGGATGGAAAAGAGCAGGAGATTGCAAAACGTTTGCTTGATTCGGGAATTTCTAAAGGACGTCTTACTGTGAGGGGATTCAAGGATCGAGAAGCTCTGAAGCAGTTGTTCTGTGAGGTGGATCTTGTGCTGATGCCGTCAAGAACTGAAGGGTTTGGCTTGACAGGTCTGGAAGCCCTTTCAGCTGGGCTTCCTGTTATTGTCAGCAAGAACTCAGGGTTTGGAGAAGCCCTGGGCAGTGTACCATTTGGTTCTTCATTTGTCATTGATTCTGAAGATCCCAGTGCGTGGACAGCAGCAATCAAGGGCATCTGGAACAAAGACAGGCAGACACGACTTGATGAGACAAAGGTTTTACGCGAGTCCTATGAAAAGAGATATGGTTGGTCTGAGCAGTGTGCAAATCTTATTGAGAAGATGGTCAACCTACTTGAGAATAGACAAGATGCTTCTGGGAGACGTCATATGTCAGTTCACGACCTCAGGGAGAGCAGAGATGCATCCATTGAAGACAGAAGAGGTGAAAGTTGTTTATTTGAAATGACTCTTATAGTTGTGTTGCTTGAATATTATTATGCTTCTGGGAGACGTCATATGTCAGTTCACGACCTCAGGGAGAGCAGAGATGCATCCATTGAAGACAGAAGAGATGCTTCTGGGAGACGTCATATGTCAGTTCACGACCTCAGGGAGAGCAGAGATGCATCCATTGAAGACAGAAGAGATGCTTCTGGGAGACGTCATATGTCAGTTCACGACCTCAGGGAGAGCAGAGATGCATCCATTGAAGACAGAAGAGATGCTTCTGGGAGACGTCATATGTCACTTCAGGACCTTAGGGAGAGAAGAGGTGCATCCATTGAAGACAGAAGAGGGTTCTCCAGTGCCCGCAACGGGCTATTTCGATTATGGAGGCGCTTTGTTTTCCGGAAGAAAGCTCGTATGTTCCAACCAAGGCACATCATACGGTGGATACAACAAATTTATGCAAAGCGTGAAGGGGTGATTTTGCCATTACCTTGGTGTGTCAGTTTCAGCTTCCAGCTCGAGAATATTTATACCAGACTTAGGATAGTTGCAAAAGAAAATACTTGCCGAGAAGTGACACACGAAGTCACCAGCATGACAGGTATCTTTACACCACACAAAGATTGCCAACGACCAAAGGTTGTGTTGATTGAAGGCGAGCCTGGCATGGGAAAGACGACTTACTGTCGAAAGCTAGCATATGATTGGGCAACTAGACAAGGTCGCAAATGGGATGAGTCTTTTCCAAGAGTTGAAGTGCTTCTGCTCCTCAGATGTCGTGAAATTAAATCTAGTATCTGGGAAGCAATTGACGAGCAAATTTTACCCGAAGACATCGAACCAGAGGTAAGAGATATGTTTATCCAGTTCCTCAGAGAAAATCCTTCCAAGGTGTTGTTGGTGCTCGATGGGTTAGATGAGGCAGACCCTGAAAAACTGACACTATTCCGTAAACTGGTTCAAAAAGAGAAGCTCCCTGGTTGTTTCATTGTTCTTACATCTCGCCATGAAGCGGGGAGTAAGATAAGGCCGTACACCGACACTTTGTTGGAGATTGAGGGATTTACGAGAACTGATGCTAAATGTTTCATAAGAAAGTACTTTCGATATTCAGGCAATAAACGCTTGGCAAAGGGACTCATTGCAAGACTGTCGTTAGAGAGTTTGAGTGAATTAACAAGAAACCCTCTGAACACTCTCCTACTCTGTGTTATCTTTGAGCATCTTAACGGGGCTCTGCCAAACAGCAGAACAAAACTGTACACAGAGATCGTCCGGTTTGTTTTGAGACGTTACGAAAACAAGAACGGCCTGTCAAATAGTGATGAAAACCTTCTTTTATTTCACAAGAAGGAATTGATGATCCTTGGCAAAATGGCACAAGACTCTCTACAGAAAGGAGAGCTCTATTTTGAAGACAATAGAGGCGATTTGAAGGAAAGTTTATTAGGTAAATTTGGCTTTGTGTCTATCCAGGTTGGAGGTACCAAGATAGCACCTTGTCCCCGTTACGTATTTTTTCATAAGAGTTTTCAAGAGTTCCTTTCGGCCTTTTTCCTTGCCTTTTCTATTATCGATGGTACAATGGATTGCAAGTCAGTGGCTAATAAAGAATACGAAACGAAACTAAGTCAAGTATTCACATATATGAGTGGAATCGTAGCCATGTATTCGAAGGAAACTGCCGTGTCAATTGTTAAAAGCATTGCATCAGTTGTAAATGCGTCAGGCCACATATCCCGTGTCTATCTGACACACCTGAGTTTGGCTTTACGCTTTATAAACGAATGCAAACTTTTTTCAGAAACCCTGTACACAGAATTAGCCCATTTATTTGGCAAGAGTCTTTATCTCGTCGACATGAAGTTTGAGCTCCTGCGTAATTTTTGCAATGGATCATTCGAGACCCTATTCATGGCCTTGAGTGTAAACACCTCTCTTACCTCTTTGAATTTGTCTGAGAACGACATTTGTGCTAAGGCAGCTAATTCCCTATCTGAGGCCTTGAGTGTAAACACCTCTCTTACCTCTTTGAATTTGTCTGAGAACGACATTTGTGCTAAGGCAGCTAATTCCCTATCTGAGGCCTTGAGAGTAAACACCTCTCTTACTTCTTTGAATTTGTATTGGAACTCCATTGGTGATGAGGGAGCTAATTCCCTATCTCAGGCCTTGAGAGTAAACACCTCTCTTACTTCTTTGAATTTGTCTAAGAACTCCATCGGTTATGAGGCAGCTAATTCTCTGTATCAGGCCTTGAGAGTAAACACCAATCTTACTTCTTTGAATTTGTGTAAGAACACCATTGGCGATGAGGGAGCTAAGCCCCTATCTCAGGCCTTGAGAATAAACACCTCTCTTACTTCTTTAGATTTTGCTTGTAACTCCATTGGTTATGAGGGAGCTAATTCCCTATCTCAGGCCTTGAAAGTAAACACCTCTCTTACTTCTCTGAATTTTGCTGTTAACTCCATTGCTGATGAGGGAGCTAATTCCCTATCTGAGGCCTTGATAGTAAATGCCTCTCTTACTTTTTTGAATTTGTCTTCCACCTCCATTGGTTATGAGGGAGCTAATTTTCTATCTCAGGCCTTGAAAGTTAACACCTCTCTTATTTCTTTGAATTTGTCTTCCAACTCCATTGGTGATAAAGGAGCTAATTCCCTATGTCAGGCCTTGAGAGTAAACATCTCCCTTACTTCTTTGAATTTGTCTGAGATCTACAGTGGTGATGAGGGAGCTTATTCCCTATCTCAGGCTTTGAGAGTAAACACCGCTCTTTCTTCTTTGGATTTTGCTTGTAACTCCATTGGTGATGAGGCAGCAAATTCCCTATCTCAGGCATTGAGAGAGAACACCTCTCTTTCTTCTTTGAATTTGTCTCATAACTCCATTACTTGTGAGGGAGCTAATTCTCTATCTCAGGCCTTGAGAGTAAACACCTCGCTTGCTTCTTTGAATTTGTCTGGGAACTACATTGGTGGTAAGGGAGCTAAATCCCTATCTGAGGCCTTGAGAGTAAACACTTCTCTTACTTCTTTGGATTTTGGTTGTAACTCCATTGGTGACGAGGGAGCTAATTCCCTATCTCAGGCCTTGAGAGTAAACACCTCTCTTACTTCTTTGAATTTGTCTAGGAACTCTATTGGTTATGAGGGAACTAATACCTTATCTCAGGCCTTGAGAGTAAACACCTCTCTTACTTCTTTGAATTTGTCTCAGAATTCCATTGGTTATGAGGGTGCTAATTCCCTATCTCAGGCCTTGAGAGTAAACACCTCTCTTACTTCTTTGGATTTGTCTGATAACACCATTGGTGGTGAAGGAGCTAATTCTCTATCTGAGGCCTTGAGAGTGAACACCTGTCTTACTTCTTTGAGACTGACGTTAAATGACATTGGTGATGAGGCTGCTAATTCCCTATCTCAGGCCTTGAAAGTAAATGCCTCTCATCATATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C3VPR6	Protein NLRC5 OS=Mus musculus OX=10090 GN=Nlrc5 PE=1 SV=2
Q86WI3	Protein NLRC5 OS=Homo sapiens OX=9606 GN=NLRC5 PE=1 SV=3
Q9C000	NACHT, LRR and PYD domains-containing protein 1 OS=Homo sapiens OX=9606 GN=NLRP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR052201 all species →	Family	Leucine-rich repeat-containing regulator of pluripotency	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24111 all species →	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22614	NLRC3, NOD3; NLR family CARD domain-containing protein 3	-	Pattern recognition receptors	ko04054	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.