Gene detail

Detailed information of XP_044172444.1 in Acropora millepora

Genomic Location: NC_058067.1:33947346...33967924
NR annotation: XP_044172444.1, receptor-type tyrosine-protein phosphatase F-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044172444.1

ATGTGGGACCAAGTTCCAGCTGAAGATCAAATTGGTGCTATATTGTATTACACAGTTATGTATAGAGCGTTACCTAGTGGTTCTGTACAAATACGGAGTGTATTTGCGCGAGCAAACCAAACGATATTGACAGGTTTAAACAAATACACCAACTACAGCATCACAGTGTCTGCATCTACTAGTAGAGGAGCGGGAAATTTCAGTTCACCTATCTTTATTGTCACGGATGAAGACAGACCAAGTGCTTCTCCTGCTAACGTCAGAGGGTACAACACAAGCTCCACCAGTATTTTTGTTCAGTGGGACAAGGTCCCAGCTGCACATCAAAATGGTGTCATATTGTATTACACAGTTATCTACTACAGTGCGCACTACAGTCGTTTTCCGCAAACAGTGGTTGTGGCTGCACCAACAACTCATACGACGTTGACCGGTCTTAATCAAAGAACCCTCTACTCGATAACTGTGTCTGCGTCCACCATCAAAGGAGGTGGACCTGCTGCTTCCGCTATCTATTTCGCTACAGGGTGTGCAGAGGAGCCGGAGATTCGTAATAGAACGAATGGTGAAATAATTATCAACAGCAACTACTACTACTACTACCAGTACAACCGATACACTCAAACGTGCAGCTGGAAGATTATGGCGAATAAAGGAGAACAAGTCAAGTTGGTGATTGAACATATGCATGTGAATAGTAGTTGTGGCTGGTCTTGCAGTTGTGGTTACGTGGAAATTCAAAATGGAACCTATGCAGATGGATCCACCCCCACAACAATGTGCAGTTATCTCTTAGGAAAAGTAACAATTTATTCTCAAGTTGGTCACTGCTTAAAGATCGAGGCCGCACATTCTGCTCTCTGGTGGGCTAACTTTCAATTCAGAGCTTCTTACACAGTAATCAGTCACAAAGACATTTTGTCGGATGAATGCTCCAACTACATATTTCTAAATGAGTCGGACAGAGCAATGACGTATGCAGAAAGAAGCCTTGGTAACCTCTCCGATTCCAAGTTGTCTGGTTGGTATCGATTTAGTGGAGGAGCTGGAGCACAAATGGCAGACGGGTGTCCTAAGATGTATTCCTGCAGCACAAACTCATCCGGCTGGCTCAACGGTGAGCATCCAGCAGTGGCCGAGGGAATTGTGCAACGAAAAGTCTGTTTTTCGCAACGTGTATCAAAGTTTTTGCATTATTGCTGCAGTCATTCAAAAGACATCAGCGTGCGAAACTGTGGAGCATTTTATGTTTACCGCCTTGATCCTCCCGTCTGGAACTCACGCTATTGTGGTAATGGACTACCGCAAGCACCAGAGTGTTTAAACTACCAGTTCTTAAATGATTGCAGCAGAGCAGTGACATACAACCATAGCGTTTCGATGAATTGTAACGACGCTACTGAACTGCTTGGTTGGTACCGTTTTGATGGAGAGGCTGGAACTCAAATGGCAGATACTTGTGTTAAGTGGCGTCACTGTGGTGCGTGGTATCCCGGATGGCTCAATGGAGGACATCCTTTAGTGTCAGATGGCGCTGTTACGCGTAAAGTGTGTTTTACAGGATACCAGTGGTGCTGTCAATACTCAACCTTTATCAGCGTTCGCAACTGCAGTGGATTTTACGTTTATAAACTGTCACCTGTCGTCCCGTATTACTATCAATGTGACTACCGCTACTGCTCTAGCTATGGGTTTGGACTGCCAACAAGATCAAGTGCTCCTCCCGCAAATGTCAGTGGCTACAACATAAGCTCCACCAGTATATTTGTTCAATGGGACCAAGTTCCAGCTGCACATCAAAATGGTGCTATGTTGTATTACACAGTTACCTACCGGGAGTTACCAAGTGGTTTCCGACAAACTGTGATTGTGGCTGCGCCAGCACACCAAACGACTTTGACCGGCTTAAATAAATATACCAACTACAGCATCACAGTGTTTGCATCTACTTGCAAAGCTGGAAATGTCAGTGCACCTATCTTCATTTTCACAGATGAAGACACACCAAGTGCTTCTCCTGCTAATGTCAGAGGGAACAGCACGAGCACAAGTATTTTAGTTCAGTGGGAACAAGTTCCATCCCCATATCAAAATGGTGTCATATTGTATTACACAGTTACCTATTACAGATGGTACTATAGCCGTTTTCCACGAACGGTGATTGTGCTTGCACCAACAACTCAAACGACACTGACAGGTCTTAATCACAGCACCGTTTATTCGATATCTGTGTCTGCGTCTACCAGCAAAGGAGATGGACCTGCTACTTATATCGATATCGCCACAGTTGGTGTGGCTGGTCCTGTAGCTGTGGTCACGTGGAAATTCAAGTTGGAACCTATGCAGACGGATCCACCCCCACAAGAATGTGTAGTCATCTCCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91X17	Uromodulin OS=Mus musculus OX=10090 GN=Umod PE=1 SV=1
P19218	Pancreatic secretory granule membrane major glycoprotein GP2 OS=Rattus norvegicus OX=10116 GN=Gp2 PE=1 SV=1
P25291	Pancreatic secretory granule membrane major glycoprotein GP2 OS=Canis lupus familiaris OX=9615 GN=GP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000034 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050379 all species →	Family	Type I Cytokine Receptor	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23036 all species →	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004896 all species →	Molecular Function	cytokine receptor activity	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0019221 all species →	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0019955 all species →	Molecular Function	cytokine binding	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_044172444.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.