Genomic Location: NC_058067.1:16372312...16376387
NR annotation: XP_044172593.1, 60S ribosomal protein L44-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044172593.1 |
| Protein |
| XP_044172593.1 |
| UniProt accession | Description |
|---|---|
| Q6BLK0 | Large ribosomal subunit protein eL42 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RPL44 PE=3 SV=3 |
| P52809 | Large ribosomal subunit protein eL42 OS=Cyberlindnera jadinii OX=4903 GN=RPL44 PE=3 SV=2 |
| A0A1D8PEV4 | Large ribosomal subunit protein eL42 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RPL44 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007639 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00935 all species → | Ribosomal_L44 | Ribosomal protein L44 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR053708 all species → | Homologous_superfamily | Eukaryotic Ribosomal Large Subunit eL42 | Interproscan |
| IPR000552 all species → | Family | Large ribosomal subunit protein eL42 | Interproscan |
| IPR011332 all species → | Homologous_superfamily | Zinc-binding ribosomal protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10369 all species → | 60S RIBOSOMAL PROTEIN L36A/L44 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02929 | RP-L44e, RPL44; large subunit ribosomal protein L44e | - | Ribosome | ko03011 | deepkoala |
Transcript abundance of XP_044172593.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
