Genomic Location: NC_058067.1:23748184...23763898
NR annotation: XP_029190655.2, coatomer subunit beta-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044172890.1 |
| Protein |
| XP_044172890.1 |
| UniProt accession | Description |
|---|---|
| Q5ZIA5 | Coatomer subunit beta OS=Gallus gallus OX=9031 GN=COPB1 PE=2 SV=1 |
| Q9JIF7 | Coatomer subunit beta OS=Mus musculus OX=10090 GN=Copb1 PE=1 SV=1 |
| P23514 | Coatomer subunit beta OS=Rattus norvegicus OX=10116 GN=Copb1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005975 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01602 all species → | Adaptin_N | Adaptin N terminal region | Repeat | Interproscan |
| PF07718 all species → | Coatamer_beta_C | Coatomer beta C-terminal region | Domain | Interproscan |
| PF14806 all species → | Coatomer_b_Cpla | Coatomer beta subunit appendage platform | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002553 all species → | Domain | Clathrin/coatomer adaptor, adaptin-like, N-terminal | Interproscan |
| IPR016460 all species → | Family | Coatomer beta subunit (COPB1) | Interproscan |
| IPR011710 all species → | Domain | Coatomer beta subunit, C-terminal | Interproscan |
| IPR029446 all species → | Domain | Coatomer beta subunit, appendage platform domain | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10635 all species → | COATOMER SUBUNIT BETA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0030117 all species → | Cellular Component | membrane coat | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005198 all species → | Molecular Function | structural molecule activity | Interproscan |
| GO:0030126 all species → | Cellular Component | COPI vesicle coat | Interproscan |
| GO:0006888 all species → | Biological Process | endoplasmic reticulum to Golgi vesicle-mediated transport | Interproscan |
| GO:0006891 all species → | Biological Process | intra-Golgi vesicle-mediated transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17301 | COPB1, SEC26; coatomer subunit beta | - | Exosome | ko04147 | deepkoala |
Transcript abundance of XP_044172890.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
