Gene detail

Detailed information of XP_044173606.1 in Acropora millepora

Genomic Location: NC_058068.1:1179330...1211383
NR annotation: XP_044173606.1, otoferlin-like isoform X4 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044173606.1

ATGTCACTGTTTTTACTTCTAAAAACTTGCTCAAATCTACGGGGAAAGTCGGACCGAGTCGCCAGGGTCACTTTTAGAGGGGTTACATACCAGACAAGTGTAATAGAAAACTGCTCTGAAGCTGATTGGGATGAGGACTTTGAGTGGCCCTTGGAGAGTCCTCTGGACCCCAGTGAATTCATTGAGATTGAAGTCTACAACTTCAATAAAATATTTAACAACAGATTGGTTGGAGTATTTCGTATGGTACTCCAAAAGCTCATACAAGATGGCCAACTGGAAGTCATGGAGAGTCTCATAGATATGAACAACACAGTCCTTAAGGCCACTGTTGAACTGGAATTGCAGTACAATCCTCCAGAAGGGAATTTCCCCCAGTGGGTGGACAACATTCATGATGCTCCTGATGGCATACCTCAAGTTGGCTACATGCCAGAGGCTCGATACCCGATGATGGATCCATACGCCGAAGAACGCAGAGGCTCCTTCATTAGTGCAGGAAGCAACTTTGGCAGCAAGGCCCCTAAGAGCCAATCAATGACAAGTTTACCTTCCAGCCATCCTAGGCAGTTGCGTAAGGAGTCAATGCCGGCATCTATTGGAGGCGGTGGTGGAGCCAAGTTTATTTCACCTGAGGGTACATTGCCTTTTGATGCTATGTTGAAAGGTGATGCAGTTGGAAGTCGCAGAGGATCGCAGATCAGTATGCATAGTGATCGCAGTATGAGCATGAAGTGTAGTCACGCACATCCCAGAGTAAGAGCTGAGAAGAAAATGTCAGTCAGAGAACAAGATTATCAGATTCAAGTTCGTATCCTGGAAGGACGTCAGTTTGCAGGAACCCAGATTGATCCAGTTTGCACAGTGAATGTTGGAAATCAAAAGAAGAGCACAACAATAAAAGAACAGACAAACTGCCCATTTTGGGATGAGTTCTTTGTGTATGATTTCAAAATGCCAGCTATGGTCTTATTTGACAAGATCATCAACTTCCAGGTATTCACTGGAAGAAATTTAGTGAGTCAAGGCCTCCTCATTGGAGCTTTTAAGCTGGATGTGGGAACTGTCTATGCCCAACCAGATCACAGATTTTGTCGTCGATGGGCTGTGTTGACTGATCCTGAAGAAACATTAGGAGCTTCTGGTGCCGGCATCAAGGGCTACCTGAAAGTTGACATTACTGTTCTAGGTAAAGGTGACCCAGCCAAGGAACCTCCAGGCATTAAGGACAATGATGATGACATTGAAGGCAATCTATTATTACCTGAGGGAGTTCCTGCAGAAAGACCAAAAGCCAAGATCATTGTAAAAATTTACAGGGCAGAAGGCCTTCCAAAGATGAACAGTGGGCTCATGGCAAACGTCAAGAAAGCTTTCACTGGAGAGGTACGAGATCTTGTGGATCCTTATGTGGAAGTGTGCTTTGCAGGACACAAGGCCAGAACAACGGTGAAAAAGAACACTTATGAACCAATGTGGAATGAACAGATTGTTTTCTCTGAACTGTTTCCCCCTCTTTGTAGAAGATTAAAGATTCAACTGAAAGACAGTGACTCTGTGTCGGATGAGGTCATTGGAACTCATTTTATTGACTTGTCTCGCATCTCCAATGATGGCGCCAATGTTCATAAATATCCTGCGGATATTGGTTTCATGCCAACATTTGGCCCTTGCTGGGTTAATCTGTATGGGTCTACAAGAGACTATTCCTTGTTTGATGAGCACAATGATCTCAATAATGGATTGGGAGAGGGTGTAGCATACAGGGGAAGACTGTTAATGGCTGTGCAAGCAGAGTTTGGAGAATCTGCTTCGGAATCAGGCATCCGTCAGGTGGAGGTGGAACCCACAGCTCCCATCTCTGATACTGCAGCTGGCAAAGAAGATCACTTCCAGCTATTTGCTTGTTTATATGAAGCCAGCATGATTGAGCGTAAAGTTGGTGATAAGATGATACAGTTTGAAATGAGTATTGGCAACCATGGCAACACACTTGATGGACAGGCACTGTCAGCTACAGGTGAGGCAGTGGATGAAGTGCGGAGAAATGGTGAGAACCCAAATGTGCATCCTTTGACACCACCAGTCAGACCAGTTACTAATGACAGACAGTACTACCACATCCCATGGGAGGATTCAAAACCCTGCACACATATAAAGTTCACGTGGCAGGATCATCGCAGACGACTTTACAACTCTAATGTGCTTCTCAAGATCTGTGAGAGGCTGGAGGATGGTTTGACTGATTGTCTAGAGAGAGTGAAGATGGACTTGCCCAATACTTACAGATGGCTCAGTAGAGTCCTTGCTGAACTCATCAATGGCTGCAACCAGTACCTTAACTTGGTAAAGTCCATGCCATCAGCATCACACGTGGGTCGCACCAAATTGGATAAGGAACGGCTGAAGCTGTGTCAATATGAGGTGGAATCTGTGTGCCAATCAGCACAGGAACTCAAGGGAAGTACCAAAGATGACACTCACATAAAGGATAATCTCAAGGCTGCTAATGCACTGCTACAGAGGCTGCTCAATATTGCTATTGAGCCACAAGAAACTACGCCTGATGTGTTCATCTGGATGCTTTGTGGTGGCAAGAGAGTAGCTTACACCCGCATCCCTAGTCAGCATATTGCTTACTCGTTGGTTGAAGAGGAAAGAGGCAAAGATGCTGGCAGAATGCAAACCGTGTTCCTCAGGCTTCCAGGTAAGCGAGGCGATGGTCCAAAAGGATGGGCGATTCAAGCCAAGCTGAATGTCATGATCTGGCTTGGTCTCCACAAACACAAGAAAGACTACCTCAAAGATGCGCCAAAAGGATACCAGACGCCAAAGAACGCACACAAGCTGATGGCTCCTCCACCAAACCATCTCATCTACACAGAGAAACAAAAGTTCGTCTTGCGGGCTCACATTTACCAAGCCAGGAGTTTGATTGGTAGTGATGCTTCGGGGCTGTCAGATGCGTTTGGTCGTGTCATCTTCACCCATTTGGTCTCTGATACCCGCGTCATTTGGGAGACAAGAAGTCCAACCTGGGACCAGATGCTGATGTTTAAAGAATTGATTCTGTGGGGAGATGTCAATGAAATTGCTGTTAACCCTCCCACGATTGTGGTTGAAGTCTTTGACAAAGATATTGGGGGTGATTCTGAGTTCATTGGTCGAGCACTAGCCAGACCTATTGTCAAGATGGCTTGTGAACCGTATGAGAAGCCATTCTTTCCACCCGCACTGGAATGGTTCCAGATCTTCAGAGGAGAGGAGAAAGCAGGAGAATTGCTGGCAGCCTTTGAGCTTCTTCAGCTCTCTGAGGGTGCGTGCTTCCTTCCCTCTGAAGTTGAACCAGTCAATACTCCGGATGGACCAATCACACCTGTTCCTGTTGGAATCAGGCCAGTTATGAGGAAACACAGAATCGAGGTGCTGTTTTGGGGCGTGCGCGAGATGAAGAGAATCAACCTGACTACTGTGGACAGACCTCAGGTGGACATTGATCTGGCTGGTCACGTGATACAGTCAACCGTTATTGCCAATGCTAAGAAGAATCCCAATTTCCAAAATCCGGTCATCTTCTTTGATGTGGAACTTCCAGAGAACGAGCGTTACTGCCCGCCGCTGACCATCCGGGTCCGGGATTGCCGTACATTTGGTCGGTTCACGCTGGTTGGTACACATGTGTTGAACTCGCTTCACCGCTATCTGCAAACAGGAGAGAAAGAGAAGGAGAAACTGGAAAAAGCTGAGGCGGTGACTGGAGGAGTTGGTCCCGGTACCTCACGCCCAACATCACCAGTTCCTGGAGCTGATATCACTATTGAAATTGACGAGGATCCCCCTGAAGCAGACGCCGAACCCCTGCTTTATGCCCAACAATTAAAGGAGAAAAAGAAAAGATCTGGAGAAGGCGGAGGCGAGGAAGGAGGCAAAGGCGGAAAAGGCAAATCAAAAGAAGAAGAAGATGCAGAGGACGCTCTGGATTGGTGGTCACGATACTACGAGACACTGAAGGACAAAGAAAGGGGCGAAAGGAGAGGAGACCAGCATATGGCAAGACAATCCAAGAAGAAAGATAAAACACCAGAAGAGACTGAAGAAGAAAAACTGAAGAAAAAAATCCCAAGGCTTACGATCTTCGACTGTGAGTTGGAAACCTTGCCTGAGTTTAACGGTTTCAACGACTGGCTGAACGCTTTCCCACTGTATCGTGGAAAGAAAAGTAGCGAAGATGACGACGATGATCACAGAATTGTTGGAAAATTCAAGGGATCTTTGAAAGTTTGGAAGTACCCGTTGCCTGAATACGTGGAAATGGATCCTATTGTTGGTACATTCCTCAAGTTGCCAAGCAATGAACCCGTCAATATGCTGGCTCGAGTTTACGTCATTAAGGCTATCAATCTGCACCCTTCTGACGTAAACGGGAAGGCTGATCCCTATGTGGTTGTCACGCTTGGTAAACACAAAGTCAGGGATCGTGATAATTACGTTTCAAAACAGCTCAATCCTGTGTTTGGAAGGTGCTTTGAATTCGAGGCGATCATTCCAATGGACTCCATGTTGACTGTTGGTGTGTATGATTGGGATTTGGTGGGGAGTGATGATCTCATCGGTGAAACCAAAGTTGACTTGGAAAACAGATTTTACAGTCGGCATCGACCCACGTGTGGACTGCAGGAAAGTTACGCAACATTTGGATTCAATAAATGGCGTGATCCAATGCGCCCAACTCAGATCCTCGCCAAGATTTGCAAAGAGGAGGGACTGGACGGACCTCACTACTCCACCGGAAGAGTTCGTATTGACAACAAAGTGTTTGGCGCTACATCGCAAGTCCTCGAGGAAAGCGGTCATTTCAAACAGTCCGATGAGCCCGTTGCCCTTAAAGCGCTGCGAAATTTTGGTTCACTAAAGAGAGGCTTTCCTCTGGTACCAGAACATGTGGAGACGAGATCACTTTTCAACCCAGAAAAACCCGGCTGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SPC5	Otoferlin OS=Danio rerio OX=7955 GN=otof PE=3 SV=1
Q9ERC5	Otoferlin OS=Rattus norvegicus OX=10116 GN=Otof PE=1 SV=2
Q9ESF1	Otoferlin OS=Mus musculus OX=10090 GN=Otof PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000314 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08151 all species →	FerI	FerI (NUC094) domain	Domain	Interproscan
PF08150 all species →	FerB	FerB (NUC096) domain	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR037722 all species →	Domain	Ferlin, third C2 domain	Interproscan
IPR012561 all species →	Domain	Ferlin B-domain	Interproscan
IPR012968 all species →	Domain	FerIin domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR037724 all species →	Domain	Ferlin, fifth C2 domain	Interproscan
IPR037721 all species →	Family	Ferlin family	Interproscan
IPR037726 all species →	Domain	Ferlin, first C2 domain	Interproscan
IPR037723 all species →	Domain	Ferlin, fourth C2 domain	Interproscan
IPR037720 all species →	Domain	Ferlin, second C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12546 all species →	FER-1-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007009 all species →	Biological Process	plasma membrane organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_044173606.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.