Gene detail

Detailed information of XP_044173720.1 in Acropora millepora

Genomic Location: NC_058068.1:3821074...3826194
NR annotation: XP_044173720.1, 28S ribosomal protein S23, mitochondrial-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008386 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10484 all species →	MRP-S23	Mitochondrial ribosomal protein S23	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019520 all species →	Family	Small ribosomal subunit protein mS23, metazoa	Interproscan
IPR023611 all species →	Domain	Small ribosomal subunit protein mS23, conserved domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15925 all species →	MITOCHONDRIAL RIBOSOMAL PROTEIN S23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17402	MRPS23; small subunit ribosomal protein S23	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_044173720.1 across 54 RNA-seq samples of Acropora millepora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

54Samples

51TPM > 0

2Conditions

5,866.5Max TPM

2,113.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole larvae	30	27	1,086.67	5,357.92
branch	24	24	3,396.76	5,866.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR1929625	whole larvae	whole larvae	adult	not recorded	SRP056536	5,357.92
SRR1929634	whole larvae	whole larvae	adult	not recorded	SRP056536	4,206.23
SRR1929619	whole larvae	whole larvae	adult	not recorded	SRP056536	2,901.21
SRR1929632	whole larvae	whole larvae	adult	not recorded	SRP056536	2,835.79
SRR1929629	whole larvae	whole larvae	adult	not recorded	SRP056536	2,323.59
SRR1929622	whole larvae	whole larvae	adult	not recorded	SRP056536	2,295.34
SRR1929607	whole larvae	whole larvae	adult	not recorded	SRP056536	2,114.67
SRR1929606	whole larvae	whole larvae	adult	not recorded	SRP056536	1,548.62
SRR1929631	whole larvae	whole larvae	adult	not recorded	SRP056536	1,049.70
SRR1929613	whole larvae	whole larvae	adult	not recorded	SRP056536	1,001.88
SRR1929624	whole larvae	whole larvae	adult	not recorded	SRP056536	877.77
SRR1929614	whole larvae	whole larvae	adult	not recorded	SRP056536	671.73
SRR1929611	whole larvae	whole larvae	adult	not recorded	SRP056536	639.28
SRR1929628	whole larvae	whole larvae	adult	not recorded	SRP056536	619.19
SRR1929612	whole larvae	whole larvae	adult	not recorded	SRP056536	527.78
SRR1929630	whole larvae	whole larvae	adult	not recorded	SRP056536	495.26
SRR1929615	whole larvae	whole larvae	adult	not recorded	SRP056536	431.64
SRR1929621	whole larvae	whole larvae	adult	not recorded	SRP056536	410.93
SRR1929617	whole larvae	whole larvae	adult	not recorded	SRP056536	309.14
SRR1929633	whole larvae	whole larvae	adult	not recorded	SRP056536	301.51
SRR1929605	whole larvae	whole larvae	adult	not recorded	SRP056536	299.62
SRR1929609	whole larvae	whole larvae	adult	not recorded	SRP056536	284.91
SRR1929623	whole larvae	whole larvae	adult	not recorded	SRP056536	275.63
SRR1929616	whole larvae	whole larvae	adult	not recorded	SRP056536	263.39
SRR1929626	whole larvae	whole larvae	adult	not recorded	SRP056536	227.04
SRR1929627	whole larvae	whole larvae	adult	not recorded	SRP056536	199.91
SRR1929608	whole larvae	whole larvae	adult	not recorded	SRP056536	130.27
SRR1929610	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929618	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929620	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929603	branch	branch	adult	not recorded	SRP056536	5,866.46
SRR1929587	branch	branch	adult	not recorded	SRP056536	5,543.88
SRR1929601	branch	branch	adult	not recorded	SRP056536	4,862.82
SRR1929599	branch	branch	adult	not recorded	SRP056536	4,704.99
SRR1929581	branch	branch	adult	not recorded	SRP056536	4,652.28
SRR1929594	branch	branch	adult	not recorded	SRP056536	4,583.11
SRR1929591	branch	branch	adult	not recorded	SRP056536	4,353.52
SRR1929588	branch	branch	adult	not recorded	SRP056536	4,290.48
SRR1929600	branch	branch	adult	not recorded	SRP056536	4,139.40
SRR1929604	branch	branch	adult	not recorded	SRP056536	3,734.36
SRR1929585	branch	branch	adult	not recorded	SRP056536	3,574.89
SRR1929589	branch	branch	adult	not recorded	SRP056536	3,304.64
SRR1929583	branch	branch	adult	not recorded	SRP056536	3,200.52
SRR1929590	branch	branch	adult	not recorded	SRP056536	3,021.80
SRR1929593	branch	branch	adult	not recorded	SRP056536	2,921.91
SRR1929586	branch	branch	adult	not recorded	SRP056536	2,739.08
SRR1929582	branch	branch	adult	not recorded	SRP056536	2,476.32
SRR1929597	branch	branch	adult	not recorded	SRP056536	2,280.37
SRR1929596	branch	branch	adult	not recorded	SRP056536	2,236.43
SRR1929584	branch	branch	adult	not recorded	SRP056536	2,016.06
SRR1929602	branch	branch	adult	not recorded	SRP056536	1,962.65
SRR1929592	branch	branch	adult	not recorded	SRP056536	1,835.09
SRR1929595	branch	branch	adult	not recorded	SRP056536	1,754.94
SRR1929598	branch	branch	adult	not recorded	SRP056536	1,466.14

Source: CnidoSite RNA-seq expression matrices (AMILL_TPM, StringTie quantification over 54 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.