Genomic Location: NC_058068.1:6562486...6590795
NR annotation: XP_044173837.1, LOW QUALITY PROTEIN: D-alanine--D-alanine ligase-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044173837.1 |
| Protein |
| XP_044173837.1 |
| UniProt accession | Description |
|---|---|
| B5YFT1 | D-alanine--D-alanine ligase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 GN=ddl PE=3 SV=1 |
| Q748D8 | D-alanine--D-alanine ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=ddl PE=3 SV=1 |
| Q38ZM8 | D-alanine--D-alanine ligase OS=Latilactobacillus sakei subsp. sakei (strain 23K) OX=314315 GN=ddl PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005446 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07478 all species → | Dala_Dala_lig_C | D-ala D-ala ligase C-terminus | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011761 all species → | Domain | ATP-grasp fold | Interproscan |
| IPR013815 all species → | Homologous_superfamily | ATP-grasp fold, subdomain 1 | Interproscan |
| IPR011095 all species → | Domain | D-alanine--D-alanine ligase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23132 all species → | D-ALANINE--D-ALANINE LIGASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008716 all species → | Molecular Function | D-alanine-D-alanine ligase activity | Interproscan |
| GO:0009252 all species → | Biological Process | peptidoglycan biosynthetic process | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
XP_044173837.1.Transcript abundance of XP_044173837.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
