Gene detail

Detailed information of XP_044175240.1 in Acropora millepora

Genomic Location: NC_058066.1:3775804...3790659
NR annotation: XP_044175227.1, pappalysin-1-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044175240.1

ATGGGAGCGCACAGCAAGAGTGGATTTCATTTGATATTCCTTGGCCTAATGACGCTTCACTTGCTCTTACGCGTGGATGCTGTGCTAAGTAGTAACGCTTTTTCCATCGAGGTCAAAGCTGCCGAAGAAGAAGAAGACAAACATCGTGCCAACTGCGCTTCCACACGGCGTGTGAAACGCCACGATCACGCTCGTTTTCCGTCCTCGCCACCGACGGGGACGAAATTTGGAAAAGCGCTGCGATTTTTCGGCAACGAGGTGATTCGATTTTCCGGAGCTGTCAAAATCCCGTCTCACGAATTCACCTTGGACTTTTGGATGAAGCCTGAAGGCGGGCAAAAGTCGCCGGTGACGGTACTGGGGATTTTCGATGACTGCTCGTCGGATCTGAAAGATGGAGGTTGGGAAGTAGGGCTCGAGGAAACAAGTTCTCAGAGGAGTTTAAGAGTCTTCTTTCGGCTGCGCACTCAGCGATCTCCAGTAGAGACAAAACTTATTTCTCCACGCGGCTTGGAACCCAATGTTTGGCTTCACGTCGCCGCAACTTACAATGGCAAAAGCATGAAATTATATATCAATCAAGCGAAAGTGGCAGTTTCCTCAGAACAAAGCGGTCACATTTTCGCCGAAGGATTCCATGTGTGTGAGCATTTTGAAGCAGGGGGCAATCGCTCATCCGGTGTGTTTTTTCGCGGAATGATCGACGAAGTTCGATTGTGGTCCATTGCAAAGACGCACGAGGAAATCAGAGCGAATGTCTTCGCTCCTACTTTAGATAAGGAACGATCTCTGAGGTTGATTGAGAGTTTTTCAGGTAAAGAAGAACTCAATCGCAATCCTAAGACCACATGGGTTCCTTTAAGAGGCCAACCGGAAATAACAAAGTCAACTATTCCCGGCGATGCACACGATCTTGCAATTCTCAAACCGCCATGTGGCGAAACAGTGTGTGATAACCCCGAAATCATCAGAAGTTATGTGAAGAATACGGAATTACGAGGCAAAAAGATAGTGAGATATCGCGTTGTTAATATTTTAGAGGACAACGGTACAAACCCCATGGTGACAAAAGAGCAGATACAAATGCAACATGTTTTGCTCAATCAAGCTTTCGCACCTTACAACATCACCTTCGAAAAAGAGGAACATGAATTACGCAATACATCTTTACGTCGTCGAACTGTTACTTACAACTGCGAGGCCAGCAAAATCGGCGACGGAGTCTGCAACGCAGAGTATTGTATGCACAATATCACTGGAAATGACGGAGGCGACTGCGATGATAAACCCCTAACCCGATGTGAGTCAGAAAAGCAAAACAATGGCAAATGCGACCCGGAATGTAACAACTATTACAACGGTTGGGATTATGGCGACTGCTGCAATAAAAGTATCACTGATGTTTATAAAACATGCTTCGATCCCACATCACCTAACAGGGCGTATATGAGTGACAGGGAGTACAAGTCCCTCGTGAATTTGGACAATCGATATTTCTTAAACGTTTACTTGGCTCAGTGGAGTAACGAGAATTTACAAGGCGTCGCGACCTTCCCGTGGGAAAAATCCGCTCATGGTATCTACGGTGGCACCGTCTTGGGTCTGACGAACTTCGGACGTAAGCACCACTCTAACGCTCTCGTTCACGAGTTCGGTCATGTGTTGGGCCTGTGGCACGTTCACCACGGAGTCTCGGAATTAGATTGCGCACACGACTGCGCGGAGACTTTTCCTTCCCTGGAGTTGGGTGACCTGTGTTCCGACACCAACCCGACACCGGCCAATAACTTTTGCAGTGATCCACGGGTTGGCAAAGATAGTCTCACTTGTGGAATAAAGAAATTCTTAAACACACCTTTCAGGAACTACATGAGCTACGCAAACGATACTTGTACGGAATCGTTCACTGAACAGCAGGCGGCGAGAATGCACTGCTACGTCGATTTGGTGTACCAATCTTGGCAACCCGAAAAGACGCCTCCTTCTTTTATTCCGCTCCCACCTCGCGTCACATCGAAGAAGGAAAACGGAGTTAAACTTGCTTGGATTCCGCCACTGGGGACAGGTGGCGCAAACGCACTCAACGGTTGCCATGAATGCCGGGAAGACAGAGTTTTCAAGCAGTATGCAGTGTCAGCGGAATCTCCAATTCCTGACAAACCGAATGGTTATTGGTCCACACACCAGGCTGTCGGGGCCCCGGATGCGGAACCGTGTATTTTATCCCCCCAAGGATGGAACTCCTTTTCCTCCACGGAACATTGTCCGGAATGTTACATAGAACTGGGATTCAAAGAGGCTGTTATCCCAACGGGATTAAGCATTTGGGTGGTGTGGAACGCCAAAGCAGGAATCACTAACATTCAACTTATTTTTGAAGACGGTTCAGAACAATCTTTAGGTAACGCCACCGCTCAGTGTGGCGCACCGCTGACCATGGCTCTCAGAGTCAATAAGAAAGTCTCCAAGATTCGCATCGAAGTTGGAGGCTCGACTGAAATTGATGCCGTTCAGCTGACGTCATCTGTCAATCATCCAAACTGCATCAATTGTCAGCCTGTAGAATACTTGGTCACCAGGGAGCCTCCGTTTTCCTCTGGGAAGAGGCAACGAGTGAGGAAGACCCGGTTTGAAGACAGCTCTTTACAACCTGGAAAGACTTACAGCTACACAGTCCAAGCTGTCACAGGTACTGGGCTCATAGGCCAACCTTCCCCTCCCTTGCTCTATTTTTCCGATAAAGGTTTCTGTGGTGACGGCGTAGTGGACCAGAGTATTGGAGAAGAATGTGATGACGCAAACGTGAGAGACGCTGATGGTTGTAATGTTCAGTGTAAGAAAGAAGACGTCTTTCATTGTACAGGCCACCCAAGTTTGTGCTACCAACATGATGGTGACGGAAAATGTGAAGATTTCGAGGAGAAAACAAGCATCAAAGACTGTGGATTTTACACTCCTGAAGGCTTTGAAGATCAGTGGGCAATTAGCGTGAGAGTAAACCCTTCCAACAATCAGAGCGAATGCTCCGGAGATGTGATTATTGGGCCACCTGCGAGGGACCTGGTTTGCCTTGGCGACTCCTTTAACAGACAGCACGCTTGGGGTCCCTGTGACGTTGATAGAAATGGTAATTTTTGGCTTGAGGTAACGTTTAACCGTTCTGTGGTTCCAGCAGCAGTGGTCATTTATTTAGGTTCTGATGGCAAATCAGCCTACATGGATCTTAAGGAGAAAACTATCAAAGTCGAACTTATCGACAGTTCGGGAAAAGTGCTTCCATCGGGTGGCGATGAGACTAAACTGTCATGTAAGAGTAACCCAGCTGTCGTTCCAATATTCCACGATATGACCAAACCGTTTTTCTACGTGAGAAAAGTTCGCGTTCGGTTCAGGTCGCTCTTGGTAGCCGTAGCAGGCGTAGCACTGCGTTCAAGAGCTTCGTTTGATGTTGTTGAGATGTCCAAGTGCAGACCGGACGAGATTTTTAGCCCACGTACACAACACTGTCATAAGTACATGTGTGAACGGCCATCTTGCGAGGACCTAGCAGTGAAGCATGCTACTGTCACATGCGAGGGGAATGAGGAAGGCCAAACCTGCTCAGTTACTTGTAAGCCAGGTTACCGGCCTTTCAAGACCTTCAAAATGATATGTTTGAATAAGAAGTGGCAAGGAATCAACAGAGCATGCGTACCAGTAAGCTGTGGAGCTCCCAGAATACCCCATGGAATCGCCGAATGTTCACAAGGACACACTTTTGGCAAAACGTGCGCCATCAAGTGCGTACCGCAAGCCAAAATGACAGGAGGAGAGGGACACGTGAAGTGCGAGGAAGATGGCCGATGGTCCGCGCAGACATCGTTCTGTGTTATGACATGTCCGAATTTGGTATCTTCAGAAAACAGCGAGCTTTGGCCACGGGTCGAGAGCAACTGCATGAACAGTAAAAGAACGTATTTACCCGGAGTGTCTTGCAAATACCGTTGCAAGGCAGGTTACAGACTGAAAGATCAACATGACCGGAGGCATTTTAAAATGCGATGCACTAAAAGCGGCCAATGGACGCGCTCAAGTTGTGAACGAATCACCTGTAAGGAAATTGCTCCAAACCTGCAGATATGGTATAACTGCTCTCATGGCAATGCAATGGGGAGCGTGTGCTCAAATCATTGTCCTGGAGAGACGGTTCATACCGTCAAGTGCGAAGAGAACGGCCAATGGAGTGAACCTATGAAAAGATGCAAGTCTCCTCTGGTGGGCCTCTGCTCAGTGCCAAAAGTACCGCCTGGAATTGTAGCTACGTGTGAAGATCATTACCCTGGGGGTATATGTAAAGCCAAATGCAAAGAAATCGGCTCTGATGTCATAGTGGCGGGAAATGAAGACTGGTGGCGAGTGACTCTGAAGTGCACACCGAACCTCCATTGGTATCCTGATCCTGCTCTTTTACAGTGTGTTCCCAGTTGTGACAGAAAGTACATTTCTGATGGCTGGTGTGATAAAATCAACAATAACAAACATTGTCGTTGGGACGGTGGGGATTGCTGTCGCTCGACTGCCCTAAACAGAATCGTCCGCCCAGTTCCATCCTATTGTACCACGGAATGCGAGTGCAAAGATCCAGGAGCAATTGAAAATAAAACGGAAGATAATAACCCCCCTGATGACGAAGAATCTGACGGAAGCGGCTCTGTCGAGGGTCAGTATAAGACTTCAACGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R4K8	Pappalysin-1 OS=Mus musculus OX=10090 GN=Pappa PE=2 SV=2
Q13219	Pappalysin-1 OS=Homo sapiens OX=9606 GN=PAPPA PE=1 SV=3
Q9BXP8	Pappalysin-2 OS=Homo sapiens OX=9606 GN=PAPPA2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003832 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF05572 all species →	Peptidase_M43	Pregnancy-associated plasma protein-A	Family	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043543 all species →	Family	Pappalysin-1/2	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR008754 all species →	Domain	Peptidase M43, pregnancy-associated plasma-A	Interproscan
IPR011936 all species →	Repeat	Myxococcus cysteine-rich repeat	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR000800 all species →	Domain	Notch domain	Interproscan
IPR006558 all species →	Domain	LamG-like jellyroll fold	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46130 all species →	LAMGL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07762	PAPPA; pappalysin-1	EC:3.4.24.79	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.