Gene detail

Detailed information of XP_044175890.1 in Acropora millepora

Genomic Location: NC_058069.1:6024536...6025033
NR annotation: XP_015748863.1, PREDICTED: late histone H2B.L4-like isoform X1 [Acropora digitifera]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07794	Late histone H2B.2.1 OS=Psammechinus miliaris OX=7660 PE=3 SV=2
P16889	Late histone H2B.L3 OS=Strongylocentrotus purpuratus OX=7668 PE=1 SV=3
P35067	Histone H2B OS=Acropora formosa OX=126732 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000395 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00125 all species →	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000558 all species →	Family	Histone H2B	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR007125 all species →	Domain	Histone H2A/H2B/H3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23428 all species →	HISTONE H2B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11252	H2B; histone H2B	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.