Gene detail

Detailed information of XP_044175977.1 in Acropora millepora

Genomic Location: NC_058066.1:5960036...5962219
NR annotation: XP_044175977.1, probable G-protein coupled receptor 19 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15760	Probable G-protein coupled receptor 19 OS=Homo sapiens OX=9606 GN=GPR19 PE=1 SV=2
Q61121	Probable G-protein coupled receptor 19 OS=Mus musculus OX=10090 GN=Gpr19 PE=2 SV=2
P70585	Probable G-protein coupled receptor 19 OS=Rattus norvegicus OX=10116 GN=Gpr19 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010862 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24241 all species →	NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0032870 all species →	Biological Process	cellular response to hormone stimulus	Interproscan
GO:0042277 all species →	Molecular Function	peptide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_044175977.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_044175977.1 across 54 RNA-seq samples of Acropora millepora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

54Samples

22TPM > 0

2Conditions

201.8Max TPM

23.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole larvae	30	17	32.07	121.53
branch	24	5	12.11	201.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR1929625	whole larvae	whole larvae	adult	not recorded	SRP056536	121.53
SRR1929632	whole larvae	whole larvae	adult	not recorded	SRP056536	118.60
SRR1929628	whole larvae	whole larvae	adult	not recorded	SRP056536	117.28
SRR1929634	whole larvae	whole larvae	adult	not recorded	SRP056536	108.13
SRR1929626	whole larvae	whole larvae	adult	not recorded	SRP056536	92.16
SRR1929615	whole larvae	whole larvae	adult	not recorded	SRP056536	66.13
SRR1929616	whole larvae	whole larvae	adult	not recorded	SRP056536	58.77
SRR1929629	whole larvae	whole larvae	adult	not recorded	SRP056536	41.27
SRR1929608	whole larvae	whole larvae	adult	not recorded	SRP056536	40.61
SRR1929630	whole larvae	whole larvae	adult	not recorded	SRP056536	39.77
SRR1929613	whole larvae	whole larvae	adult	not recorded	SRP056536	38.09
SRR1929617	whole larvae	whole larvae	adult	not recorded	SRP056536	28.75
SRR1929627	whole larvae	whole larvae	adult	not recorded	SRP056536	24.03
SRR1929607	whole larvae	whole larvae	adult	not recorded	SRP056536	20.26
SRR1929605	whole larvae	whole larvae	adult	not recorded	SRP056536	19.59
SRR1929622	whole larvae	whole larvae	adult	not recorded	SRP056536	16.94
SRR1929612	whole larvae	whole larvae	adult	not recorded	SRP056536	10.18
SRR1929606	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929609	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929610	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929611	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929614	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929618	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929619	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929620	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929621	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929623	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929624	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929631	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929633	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929603	branch	branch	adult	not recorded	SRP056536	201.77
SRR1929595	branch	branch	adult	not recorded	SRP056536	37.83
SRR1929601	branch	branch	adult	not recorded	SRP056536	34.83
SRR1929584	branch	branch	adult	not recorded	SRP056536	8.67
SRR1929597	branch	branch	adult	not recorded	SRP056536	7.63
SRR1929581	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929582	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929583	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929585	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929586	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929587	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929588	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929589	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929590	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929591	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929592	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929593	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929594	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929596	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929598	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929599	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929600	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929602	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929604	branch	branch	adult	not recorded	SRP056536	0.00

Source: CnidoSite RNA-seq expression matrices (AMILL_TPM, StringTie quantification over 54 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.