Genomic Location: NC_058070.1:9060940...9068782
NR annotation: XP_044176460.1, progranulin-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044176460.1 |
| Protein |
| XP_044176460.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010427 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00396 all species → | Granulin | Granulin | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000118 all species → | Domain | Granulin | Interproscan |
| IPR039036 all species → | Family | Granulin family | Interproscan |
| IPR037277 all species → | Homologous_superfamily | Granulin superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12274 all species → | GRANULIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
XP_044176460.1.Transcript abundance of XP_044176460.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
