Gene detail

Detailed information of XP_044177187.1 in Acropora millepora

Genomic Location: NC_058070.1:20243471...20301766
NR annotation: XP_044177187.1, slit homolog 3 protein-like isoform X5 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044177187.1

ATGATGTTACCCCTGATTTTGCTACTTGCTGTACTCCATGGTAGTAAACAGTGTCCGACACAATGCAAATGTCCTTCATTTAATTTACGAGTAAAATGCGAGGGTATAAAAACAGTACCAAAAGGAATTCCTCCCAACACATCGACCTTGGATTTATCGGGGAATTCGTTAAAAGCAATCCGTGAGGGAGACTTTGAAAACTTACCTTTACTGGCGAAATTGGATCTTTCAAAAAATCATTTGGAATACATTGCAGAGACTGCTTTCAAGAATCTGACGTCCCTTCAATTCCTGGATTTATCGGTGAATTCGTTGAAAGCAATCCAAGAGGAAACCTTTGAAAACTTATTTTTATTGTCGAAATTGGATCTTTCAAAAAATCAGTTGGAGTTCATTGCAAAGAATGTTTTCAAGAATCTGACGTCCCTTCAATTCCTGGATTTATCGGTGAATTCGTTGAAAGCAATCCAAGAAGGAACCTTTGAAAACTTATTTTTATTGTCGAAATTGGATCTTTCAAAAAATCAGTTGGAGTTCATTGCAAAGAATGTTTTCAAGAATCTGACTTCCCTTAAGTTGCTGGATTTATCGGAGAATTCGTTGAAAGCAATCCAAGAAGGAACCTTTGAAAACTTACTTTTATTGTCGAGATTGAATCTTTCAAAAAATCATTTGGAGCTTATCGGAAAGAATACTTTCAAGAATCTGACGTCCCTTTATTTACTGGATTTATCGGAGAATTCGTTGAAAGCAATCCAAGAAGGAGCCTTTGAAAATTTACTTTTATTGTCGAAATTGAATCTTTCAAAAAATCAGTTGGAGTTCATTGCAAAGAATACTTTCAAGAATCTGACTTCCCTTCGTTTGCTGGATTTATGGGAGAATTCGTTGAAAGCAATTCAAGAAGGAACCTTTGAAAATTTACTTTTATTGTTGAAATTGGATATTTCAGAAAATCGTTTGAAGTTTATCGGAAAGAATGCTTTCAAGAATCTGACGTCCCTTCATTTGCTCCGTCTTTCGAACAACGATATCAAGGGATCATTTCATCTTCCTTCAAAGGTCACTACTCTCCTTCTCCAGAACAATGTCTTTTCACTACCTGACTTGAAAATCATTCTCAGAGGATTGAAGCGTCTAGTCTATTTGAATATTGAATATAACAGAATGATTGGACCCAATTTTACAGCCGACGTTTTTGTGGATTCGGGCAATATGGTTGATCTGACTATGGACAACTGTGATTTGGAAAATATTGAAAGTGGAACGTTCAGTCGGATGCATATTTTAAGTAGGCTATCCCTATCTGGTAACAAGTTATCTCACATTCAAAGGGGTATGTTCGATGGAATCGGCAGCAATCTCCATGAGTTGTACCTAACATCAAATCAAATAGTGTCCGTGGAGGACGGGACTTTTGAACAACTTGGGCCGTTAGGAAAACTGACCCTGGCATACAACTCCTTATCATCGGCACCAGATCTGACTGGACTAAATTCTTCCACATATATACTTCTGGACCATAACAAGATTACCGATCTACGACCTCTTGGGAAATCTGGAAACATGGAATTCATCGGATTGAAACTGGGCAACAATAGGATCGAGTACATTCCACCAGACTTGTTCCAAAAAATTACTATCAAAGGATGGCTGGATTTGTCAGTCAATAAATTACGGAGCATACCCCATAACTTGTTTTTTCGTTCCAGTCATCTGTCATTCCTGGGTCTAAGTTCTAACTACATCAGTAAGATCGACAATGAAAGCTTTGCTGGACTTAAAACTCTTCAGACTTTGATGATGGCAAAAAACAATCTGACGTTTTTAGCGAATGATACTTTCCAAGGCATAACTCTGCAAGCCTTGCTTCTACACAGCAACGCAATCAAGAAAATCGATGTCAGAGCTTTTGCTGGACTCTATGAGCTCAAATCATTAACACTCTTTGACAACCTATTGACGTCATTGCCAGATGGTATATTTAATGATATAACATCCAAAACAAGAGTGTCAATAACTTGCAGTCAACTGAAAACACTTCCTCTTGGAACATACAATTCAGTTATTGAATGTGCCCCGTCAACAACTTTTCATTTTACCATCCCATACGCTAATGAAGGCTTTGTGCCACAGGCATTTGCCGATACAGGGTTTGAATGTCGTAATGGCAAAGCTGAAATCTATAATTGTAGTCTTTGTCAAGCAGGGACATTCAATCGACAATTTCAGTGTCTTCCTTGTGCAGCAGGAGGTTTCTATCAAGACAAAATGGGACAGGCGGAATGCAAAAAATGCAGTCCTGGAACTTACGTCTCAGTGGATCGTCAACCCGGTAGTACAGCAAGTGATTGCCGTGCATGTCCATACGGTACCCTATCCAATGAAACCGCTGGCTATCGTGCTTGCAAATGCCTTCACGGCTTTTACCGGATGGATCGTTTTGGACCTTGCACACCATGCCCAGCCCATGGGCTGGTTTGTGTCAACGATACCGCGGTTTTAGCGCCCAATTATTACTGGAAGTGGATTAACAAAAGCCATGAAGATCTGTACATAAACTTTTCAGCCAACATCCATTATTTCAAGCCTGATTATAATGTTCAGTTCTCCAGGTTTCCCTTTTTACTACCACAACCACTAAGATGTCCACTAGCAGGTTCATGTAAAGGTGGGATCGATTCAGAATGCCATGAGAGATATGAAGGAACCTTGTGCGCTTCTTGCAAGAATGGCTTTTACTTTCGGTTCAACAGTTGCTTTAAGTGTCCAAGCCTGGCTAATTCCATTATTTCATCTCTTTTGGTGGTTGCTCTCTTTGTCCTTGTCTTTCTGATGGTTCTATGGGGCGACTCAAGGAAGGCGGAGAATAATCGCACTGTCGCAGACGTTATCATGTCGTGTTTCAAAATCGTGATTGGATTTTATCAAGTCATCGCTGGTATATTTTCAGCTTTGACGAGAGTTCGATGGCCAGTAACATTGATATCAATGGAAAAGTATTTAAAATTGATGGAGGGAAATATATTTCAGTTTGCTCCATTAAGCTGCATTCACTCACGCCTTCGAATGGACCCTTTCTCTATCTTTTTTGTGACTCTTGCTGTGAACTCATTAGTCATTTCTCTGATTTTCATTTACCTCTTCCTTAAACGTCGTCATATCAAAAAGAGACGGAGCTTAACCGGGAGAGAAAAGCTATGCGCAGAGTCGTCTTTGAAGAGATCCTGTTATCGGAACATTTTCTTGTTTCTTATGGCCTCTTATCCCGTGACAAGCAAAATCATCATTCAGATCCTACCTCTTCCCGGAGCATGTGTCCAGCAATGTTTTACAGATGAGCCGAGTAACTGTATTTCTCTACTTAAGGCTGACTACTCCATCCGGTGTTTCACCAAACTACACAAGGTATACTGGCCCATTGGCGCTACTTTTGCTTTGTATCCTGTTGCTTTTCCTCTGTTGATACTGGTTCTTCTTTACAAATTCCGCGACTCACAGGAAGATAAGGGAGTTGCTTTTGGGCTCAGAGTGTTCTTTGAAAACTACAAGAAAGAGTTTTGGTTTTGGGAGGTCCCAGAGATGTATCGTAAACTGATTTTAATCTCTCTGATAAATCTGCTTGAATCAGAAAGTTCTTCACAGATAGCCGTTACCATGTTGACTGTGAGTGCATTTGGCATAGCCTATACCTTCTTCCGTCCCATGAAAGAAAAGTTTGAAGATCGACTCCATACGTTCGTTTTGTGGGTTATCTTTTTCGACGTTTGTCTTGGGGGAGTATACACCACATTTGAAGGGACTCATGAACAGAAGGAAAATGACTCATTATTCGTGAATATCCTTTTCGTGGTCCTCAACAGCTTTGTGCTGCTTGTTGCCTTGGGCAAAGGAATTGCTCACTGCAAATTCGTTTGGATAACAGTTTCTGCATGTTTGATGCAAGGTCTACATGTCATCTGTCAAGGGATTCGATCTCTGAAAATGAAGAATTTACGCTGGTTCAAATACCTGTGGCTTTCCTCTGCGGACAAGCCTGGCGAAAAAGCGCTCTTGATCTCAAATACTTCATATGGAAGTTTACACTACTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000105 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13306 all species →	LRR_5	BspA type Leucine rich repeat region (6 copies)	Repeat	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026906 all species →	Repeat	BspA-type LRR region	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050328 all species →	Family	Multifunctional Developmental and Immune Receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24373 all species →	SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08455	ADGRG4, GPR112; adhesion G-protein coupled receptor G4	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.