Genomic Location: NC_058071.1:11863040...11866602
NR annotation: XP_029202080.1, trafficking protein particle complex subunit 3-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044178071.1 |
| Protein |
| XP_044178071.1 |
| UniProt accession | Description |
|---|---|
| Q5ZI57 | Trafficking protein particle complex subunit 3 OS=Gallus gallus OX=9031 GN=TRAPPC3 PE=2 SV=1 |
| O55013 | Trafficking protein particle complex subunit 3 OS=Mus musculus OX=10090 GN=Trappc3 PE=1 SV=1 |
| Q5U1Z2 | Trafficking protein particle complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Trappc3 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008196 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04051 all species → | TRAPP | Transport protein particle (TRAPP) component | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016721 all species → | Family | Bet3 family | Interproscan |
| IPR007194 all species → | Family | Transport protein particle (TRAPP) component | Interproscan |
| IPR024096 all species → | Homologous_superfamily | NO signalling/Golgi transport ligand-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13048 all species → | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006888 all species → | Biological Process | endoplasmic reticulum to Golgi vesicle-mediated transport | Interproscan |
| GO:0006891 all species → | Biological Process | intra-Golgi vesicle-mediated transport | Interproscan |
| GO:0030008 all species → | Cellular Component | TRAPP complex | Interproscan |
| GO:0033106 all species → | Cellular Component | cis-Golgi network membrane | Interproscan |
| GO:0048193 all species → | Biological Process | Golgi vesicle transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20302 | TRAPPC3, BET3; trafficking protein particle complex subunit 3 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of XP_044178071.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
