Gene detail

Detailed information of XP_044178623.1 in Acropora millepora

Genomic Location: NC_058071.1:15537140...15550507
NR annotation: XP_044178623.1, uncharacterized protein LOC114959695 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044178623.1

ATGGAGCCGCATATGCTAGTCGACCAAGGCCTCAACGAAGCTGTTGCTCAGCGCGTGTCGGAGATCTTTGCGTCGGGGATTCTTTCTCCTGAAGAACTTGACGATCGAGCGTTCGAAGCTCTTCGCGAATTCGACCAAGAAGGCGCTTTAGAAGTGCTGAGTCAGTTCGCAAACAGTGATCTGACTCATGTTCAAAACAAAAGTGCTTTCCTCTGTGGAGTTATGAAAACCTACGTTACAAAATCCACCAGCGCCACTACCGGTGAAACAACAAACGCGGCCATCGAGGTCGTGGACAAAGCAGATGAAAGCAAGATCAAAGCACTGCTCGATAGAACTGGATACACGTTAGATATCACTTCTGGACAAAGGAAATATGGGGGCCCGCCACCTGGATGGGAAGGCCCTGCACCAGGAACAGGAGGCAGTGAAAAAGGATGCTGCCAAGTGTTTGTTGGAAAGATCCCTAGAGATTGCTTTGAAGATGAGATTATTCCTCTCCTGGAAGAATGTGGGCAAGTGTACGATTTTCGTTTGATGATGGACCCAGAGTCGGGATTAAACAGAGGCTTTGGCTTTTGCACATTTGCATCCAAGGCTGAAGTACAAAATGCAGTGAAGAAACTGGATAACAAGGAAATACGCCCTGGCAGGAAGCTGGGTGTTTGTGTCTCTGTCGCAAACAACCGCCTCTTTGTTGGCTCCATCCCCAAGAATAAAACCAAAGATGAAATATTAGATGAATTTTCAAGGGTGACTTCAGATGTGACTGATGTCATTGTGTATTTGTCCTCCGAGAACAAAGGCAAAAACAGAGGGTTTGCGTTCATTGAATATGAAAGCCACAAAGCAGCAGCTCTGGCCAAACGCCGGCTTCAAAGTGGAAAGATTCATGTGTGGGGTATGACTCTGGCGAAGGTTGAATGGGCGGATCCGCAGGAAGAACCAGATGAAGAGGTTATGGCAAAGGTAAAAGTGGTGTATGTTCGAAACATCTCGCCAAATATTACCGAAGAGAAAATCCAAGAAGAATTTGGCCAATATGGAACAGTTGAACGTGTGAAGAAGATCAAAGACTATGCTTTTGTCCATTTTTCTGAGCGCCAGCATGCTTTGAGTGCTATAGAAGGACTAAACAACAAAGTCTGGGATGATATTGCCATTGATGTCTCCCTGGCAAAGCCACAACCGGCAAACAAGAACCAGCGTAGGGGTGGTGGCCCTGGTGCAGGTTCACGTGGTAACCAGCCTCGTGGTGGTGGACCAAGGGGTAGAGGGCGTGGTCGAGGGGGTTACAACCAAGGGTATGATGCCAATGCTGGGTATGACTCTTATTACGATGGCAGCTATGATGACGGCAGCAGTTATGACGCATACTATGGTGATGGAGGTTATGGTGGAGAGGATTATAGCACTTACAGTGGTGGTTATGGAGCTAGCGACTATGGAGGGAGCTATGCATATGATGGTGCAGGTGGCAGTGCCGATTATTCCGTTCCTCCCGTGGGTAGGGGTGGTCGTGGGGGAAGGGGTGCTCCTAGGGGCACATTCCCTCGTGGGGGTCGAGGTGGACCAATCCGAGGTGGACCTAGGGGTGGAGGTTCCAGGGGTGGTGGACCAAGGGGTGGTATGCGTGGTGGACGCGGTGGTCCTGGACCTAGGGGTGGAAGAGGTGGTCCACCCCGAGGAAGAGGAGGCATTGGAAGTGCTGGAGGATATGGTCCCCAGAAGCGTAAGTTTGGTGGTGATGGCTATCAAGGCGGGGCTGGTGGATATCCTGAACCAAAGAGGTCGTACACAGATTACAGTGGCCAGGACTATGGACAGGACCAACACTGGGGACAAGACTATGGTTACGCTGATCAAGGAGAGCAGCAGTGGTATCAAGATAGCTCCTGGTCGCAGCAGTGGGGAAGAAACTGCCAGAAAAATTTTGTCGCAAGCATGCCCTTTCCTGCAAAGAATGTATATTCTGCAGTTAGTGGGAATCCTGTGGCACATTTTGACCCTGAAAGTTTTGTTGGACAACCCTACATTGCACATGCTCAGTACAGTGTTCGAGAGCACGTTGGCGGCGGACGTCTATCTTTAGTCGGCTTTCTCGAACTGTTTTGGCCAAATTTTATACGCTTATACAGCATGGAAACAACGCAAGAGTTATCGGATGATGCACAGCAACTTGTAAACCAAGGTTTGAGCGTAAAAGTTGCTCAACGAGTGGGTACTATCTTCGCAACTGGTTCTCTAGTTCCTACGGAGTTGGACGAGAGAGCGTTGGATGCTCTTCGCGAATTCAACGAGGATGGAGCTCTTGAAGTTTTGGATCAGTTTGGGAACAGTGACCTTTCCCACGTGCAGAATAAGAGTGCTTTTCTTTGTGGTGTAATGAAGACCTATCGCGAGAAAAATCGCCAAAAGGCTCAGGGACATACACCGGGAACGGAAGCAGTTAGTGGCCCCAACGAGGAGAAGATAAAAGAATTGCTGGATAGAACTGGTTATACTCTAGACATTACTACAGGACAGAGGAAATATGGAGGTCCACCGCCTAACTGGGAAGGCCCTGCTCCTGGGACGGGAAGCGAGAAAGTCTGTTGTCAAGTTTTTGTTGGCAAGATTCCCAGAGACTGCTTTGAAGATGAACTTGTTCCCTTGCTTGAAGAGTGTGGAAGAATCTATGACTTCAGACTGATGGTAGATCCCCTGTCAGGTCAGAACCGTGGATATGGCTTTTGCACGTACTCTGTCCGAGAGGAGGCCCAAGATGCCATGAAGAAGCTGGACAACAAGGAAATCAGGCCTGGAAGGCGACTGGGCGTTTGCCTGTCAGTAGCAAATAACCGACTCTTCGTTGGATCCATCCCCAAGACGAAGACCAAACAGGAAATCTTTGACGAGTTTAGCAATGTTACAACTGGACTCTCTGATGTTATAGTTTACATGTCTTCAGAAGACAAATCAAAAAACAGGGGATTTGCTTTCTTGGAGTATGAAAATCACCAAGCAGCTTCTCTGGCACGTCGCAGACTGGCCAGTGGAAGAGTGAAAGTCTGGAATGTTCATATCGTGACTGTTGACTGGGCGGAGCCACAGGATGAACCAGATGACGAAACTATGTCAAAGGTCAAAGTACTCTATGTCAGGAATGTCACCCCCAGTGTCACCGAAGAAAAACTAAAGGAAAAGTTTTCCGAGTTTGGTACAATTGAACGGCTCAAGAAAGTGAAAGATTACGCCTTTGTGCACTACGCCGAGCGAGACCATGCTGTGAAGGCGTTGGAGACAATGAACAACGCTGAATTAGATGGAGCCACTCTCGAAGTGTCCCTTGCAAAACCCCAACCATCGCAGAAGGACAGAAGACGAGGCGGCAGTGGACAGGGAGGTTTTGGCTCTTATGGCGGACCCCGCGGTGGTCCTCGGGGAGGTTCTTCTGGGCGTGGTCGCGGGGGGCCTTATGGCGGCAACCGCGGTGCGTATCATGAAACCTACGAGGACTACTATGGTGGTTACGGCAGTGGGTATGACTATGGTGCAGACAGCTACTATGATGATTATTACGGTGGCAGCGGGTATGGCTACGAACGCCCCCCTCCACCGCGAGGGGGTGGTCCCCGAGGAGGTCGCGGTGGGCCACCACGTGGTGGCCCCCCCATGCGTGGAGGTGGGTACCCTCCTAGAGGTGGTGAGCGAGGTGGAAGAGGTGGACCGCGAGGGGGCGGACCTCGCGGTGGGAGAGGAGGACCTCTAGGGCGTGGCGGACCGAGAGGAGGGGGTGTGTCCCCAGCCAAGAGGAAGTACGGTGCAGACTCTGTGCAAGCGCCAGTGGAGTACCCAGACCCAAAGCGCCGGTTCATGGGTCAGAGCCAAGGAAGTGGGTGGGGAAGCCAGCCGATTGCCCAGCAGCCGCTCTACGATAGCTACGACACCCATCAGTCCAACCAGGATTGGTACATGGATAGCTACGGTCAACAGTGGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43390	Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens OX=9606 GN=HNRNPR PE=1 SV=1
Q7TMK9	Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus OX=10090 GN=Syncrip PE=1 SV=2
O60506	Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens OX=9606 GN=SYNCRIP PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001390 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18360 all species →	hnRNP_Q_AcD	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR006535 all species →	Family	HnRNP R/Q splicing factor	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR041337 all species →	Domain	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_044178623.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.