Detailed information of XP_044178710.1 in Acropora millepora

Genomic Location: NC_058072.1:13341664...13354008
NR annotation: XP_044178710.1, coiled-coil domain-containing protein 13-like isoform X1 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
D3YV10Coiled-coil domain-containing protein 13 OS=Mus musculus OX=10090 GN=Ccdc13 PE=1 SV=1
Q8IYE1Coiled-coil domain-containing protein 13 OS=Homo sapiens OX=9606 GN=CCDC13 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005021 (this species only)

 Pfam domain
No Pfam domain signature was detected for XP_044178710.1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR038929
all species →		FamilyCoiled-coil domain-containing protein 13Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31935
all species →		COILED-COIL DOMAIN-CONTAINING PROTEIN 13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0031122
all species →		Biological Processcytoplasmic microtubule organizationInterproscan
GO:0034451
all species →		Cellular Componentcentriolar satelliteInterproscan
GO:1905515
all species →		Biological Processnon-motile cilium assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_044178710.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_044178710.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

54Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole larvae 30 0 0.00 0.00
branch 24 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (AMILL_TPM, StringTie quantification over 54 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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