Gene detail

Detailed information of XP_044178885.1 in Acropora millepora

Genomic Location: NC_058072.1:2695953...2713286
NR annotation: XP_044178885.1, uncharacterized protein LOC114977832 isoform X1 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044178885.1

ATGGCGGATGAAATGAATATAGATGAACTGTTGCTTGGCCTGGCTTCTATGGGCTTTGAATTTGAAGATTGCCAGTTAGCACTAGAGGCTGGCAATAAAACACTGGAGTCTGCAGTTGAATGGCTGATGAAAAGATCAAATCTTAGTAATAATGTCGCTGGGCAACAAGGCAAAGTTGCAGCAACCAAAGAAAACTTGGTTTCACCGACTCAAGAACCATTGATGTCCAATGAAGAAACTGCACAGCCACCCATTAGCTTGTCAAGCCGTTACACAATTAGTGAGGAACATCAGAAGGCTAAAGACCAGTTCATGGAGAAGGAAAGAGAAAATGCAAGGATGGAAGCAAAGAGAAGGAAATTAATGGAAAAAAGAGCACGACAGGAGATACTTCAACAGATAGCAGAGGACAAGGAACGACGTGTAGGGAAACTTGAAAGGAAGCAAACTGCTCCCCAGAGTATCCAGGATAATGCTCAAGCATCAACTAGTATCAAAACATCCAATGAACACTTGCCAGACAGAGACCAGTGTTTGCTTCAGATTAGAATGCCAAATGGAGTTTTGAGGAGAGAGAAATTTTTCTCTGGTACCAAGCTTCAAGATGTTCTAGCTTTCATTTGCAAACAGAATGGACTGATCACCAGTGACTACAAGCTTTTGCAGCCATTTCCTCACAAGTCTTTTAGTGAGGGTGACATGAAGTGCAGCCTAGTTGATCTTGGACTTTCACCAAGTGGTTCACTTGTTTTGAAGAAAGATGAAACTTCACAGCTGTCCACGTTATCTGCCCATGGGTCAATAGAGTCAAGTAATTGTAATAGCCATTCTGTGCAAACATTAAATGAGGAAATAGACAGACGAAGATATGACCATCAAGGTGTACTTGGAACTTCTAGCAGAAGTAATAATGATGACGATGATATTAGTGGCAATAGGGGTGATGAAGGAAACGAGATGCTGGCAGCTCCTGCCTTTTTAAACAGAAGCCCCCCTCCTGAATTGGGTGGCTTCCTGGATATGCCAGGTCCAAATGTTTTAGGTATTGGAGGAATGCACAATATAAGAGCAAGAGAGCATGGGCATGCTTGGGGAGGTGGAGTCCAACTTGGTGCTGTTGAGCATAATCCACACGCTATTGATCCTGTTCCAAGAGCACGGACACCAGGGGAGTCAGCCCTCAAGCGACTAGAGATGAGGCAACAGCCTGAGCATCAACCAGAGGCAGGACCTAGTCATCTTGGTCACGAAGATCAGCCTGTCCTTCATCGCAATGTTCAACGGCTTGAGGACATGTTAATCAATCATGTCAGTCATCGTCTCCCAGGACACCAGCACCCTATCATCAGCTTGGGCATGATGCCCCATGAGCTGTGTGATAAGATCTTGAATCATCTGATGAAGAATAAAACTCTCGCGCCTAAAGTTATGCAGGCCTTTCTCTCCAGTGGTTTGCGGCATGTCAAGTTTGATTGCTATCCTTTGGTGACGAATGAACTTCTTCTTGCTCTCAGACCTCATAGGTACTTGACATACCTCAGCTTGAAAGCATGTCCATTGATCACTGATAAAGCGCTTGAAGCTGTTGCAGTTTTAAAGAGATTGAAAGCACTCAATTTAAGCCAGTGTGCCAAACTGACTGACAAATGTTTTTTCTACATCAAAGAACTTCCATCTCTGGTGAGCTTATACCTAGACATGACTAAAATTACAGACAGGGGTGTTTGCTATTTTCTTGCTAATGCCACATGCTGTGCTGATTTGGTGCATTTGAGTTTTAATGGAACAAGCATCACAGATCAGAGCTTACAGGCCATGTCAGGCCTCAAGGCTCTCAAGATTCTGTCCATCGGAAATACAAAGATTACCTCTTTGGACATTGTTCAGCGTCTTAACCTTTTGGAAAATTTGAATGTTTCTCACACGTCAATAGATGATGATGGCTTGGTTGCTGTGGTGAATCATCCATCGCTTGCATCTCTAAATCTTTTATCAACTAATGTTTCTGACAATGGATTGCACCATCTTCAAGGGTTAAAGTTGTCCACACTGAAACTACCAAACAGACTTCACATTTCAGATAAAGGAATCAGTAATATTCAAGGACTGCCATTGCTATCTCTTGACCTGTCAGACTACATTCATGTCACAGACACTGGGATCCATTTTTTAGCAAACATGTCGAGATTAACACAGTTATCACTCAGCAATACAAAGCTCACAGATAATGGAATGGAAAGCTTGGCATCTCTCTCTGGTCATGAAGAACTGAATTTAGATAGAACATCCATAACTGATGAAGGATGCTCTGTACTAGAACGTTTCAAGCATCTGCGGATTCTTGGGTTATCATCCACCAGAATCAGTAACAAGCTTCTTTCAAATAGAACTTTGAATCATTGCAAGAATCTGGCACAGCTGAACTTGAGCAGAACTAGAATATCAAATAAGCATCTGAACCGGCTGGTGTTGCCAGCACTGACTCAACTAAACCTTGATTGGACACGAGTAACTAGCGATTGTGCAACCCTACTGACAGGTTGTCCATCACTCAAAGCCTTAAGAACAACGAACTGCACTCCACCGTCACAAGACTCGGAAGATTCAGATGATGACGAACCAATTCAACAACAATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005973 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF00789 all species →	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_044178885.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.