Gene detail

Detailed information of XP_044178904.1 in Acropora millepora

Genomic Location: NC_058072.1:18283409...18307468
NR annotation: XP_044178904.1, serine/threonine-protein kinase 11-interacting protein-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044178904.1

ATGCAATACCATGGGGGACATGAGCTTCTGGTGAAACTATCATCTTTACTTCAATCACATGGAGATCCAATTTTGAGCAAAAGAAGCACACTTTGCTTAACAGCCACATCACTGGTTTTCCTGAACCACTGTTTTGAAATTGTTAATTCAGGACAGCAAGGTGTCAGCGAGGAAGCAACGGAACAAATAGGATGTTCAGACACAGACAAAGAAGCTATTCTCTTCTTGCTCGATTTTCTCCGAAAAACACCTACTTTGAGACTTGTGCCTGGAGCTTGCTTGCATTTTGATGGTCTTGTCAATATCTCTTGTTTCAGAGCTCTTCAAGTATTAGAGATAAAGAAAGTTCCTGTTGGATTAATCCAAGGCTTTCAAGCCTTGCGGCCACAACTCAAGACTCTGATATGCAAAAGGTCGCTGATCTCACTCAATGAAGTCTTTGTTCACTGTGGTGGAGACCAGCTGAATGCATCATTTGTGTGGCCACATTTGGAAAACGTTGATTTTAGTTATAATGGAATTGAGCTATTTGATGATTCTGTGAAACTGTTGCCACAAGTGCGAGTTTTGAATTTGAGTTATAATAGAATCCAGCATAAAGAGGATGAAGAATCACATGCGTTTCTGTATTTGTCAGAGGTCCAGCATCTCAACTTGGGGTTTAACCAGATTGACAGTATTCCTGTAGCTCCCTCCCAAGGTGGAGTGATAAAATTCCAGTTGACTACTCTCATCCTAAGAAACAACAACTTGCAAAATATTAAAGGAATTGAAGTTTTCAACAAACTGCGTCATCTGGATCTGTCGTTCAACTGTGTTTCAACACTATCAGAGTTAATACCATTGGCTCATTTGCATGACCTGATTTCACTATACCTTCAAGGCAATCCTGTCTCATTCTTTCCTTTCTATCGACGTGCTACAATTGCAAGTTTGTATCCTGTACCTCGAGTGGAACCTATACAAATCGATGGGAAACCACTAGACTCTGACGAAATTGTGCTTCTTGGAAGAAATGTTCAGCCAGTGTCCATGCTATCATACATTCCTGAAACTCCAGTGGCACCGAATCCTCATGTCATAGAGGTGAGGAAAGCAGATGAAGATATCGCAGAGTCGTCAGAATCACTAGACGAAACTGATGGAACAGCAAAAAAGAGAAGGCAAAAGAGGAAAGGGAAAAAGGGCAAAAGAGTAGTCGCAAGGGAAATTGACTTTGAAGAAGAGAGCGCAGAGGACCACACGACAACGACTACTTCATGTCCAACACCCACTGAGCAATTCCTGGAACATGCCGAAGATGTTGAAAAACTCAAAAAATTACGGCAGCTTGGTGGAGAAGGCTGGTTACCTTCTATTGCTCAAGTTGTTCCAGATCCAGCTGTTCAAATTGCTTCTCCAGAATCTAAACAAGAGAAAGCATCCAGTCTTGTCAACTCAGGATCTGTGCCAAGTCTCTCTGATGACAAACTGGAAATAATTAGTCCCTCAAGTAGCACCAGTGCTATTTCTGATGGAGATATTTCTGACGCGCATCATTACCTGGTGACGCGGATATCCGAACGAGGGAGCGAAGATAGCGACGCTGTTCCTTTGTTCCTGACGCTCAAAGATCAGTTCGTCGTAGAAAAGAATTTCACTGGAAAGGTTGTTTCCCAGTTGGAAACAAGTCGCTTACGTGACGTTCATATCAGCAAGTCTGAAGATGATCGCTCTCTCGTGCACCTGGAGTTTGATTACCTCAACGTAGAGCGTCGAACACGCGATTATGTGATGGAAAGTTACGAGGACGCAATACAATTTGAAGATATTTTGAAGCCTTTTTCAACAGAAAATAAACAAATCACAGAATTGGTTGCTGAACGCTTTCAGTGTTTAAAGTGCTCGACTATGTTCACTCAATCACGAGGAAGTTTGGATGACCTTTGTCCAGATTGTAACAGCTGTATGACGGTTTTAGTTTCGTCTCCGGAGCAAAATAAAGGAGCTCTTCTTCCTCCTCCTCCTCTTCGGAATATAGGAGATTACAGAAAAGAACACGCTGGCGCGTCTTCGCTGAACAAAAGCTCGATAAAGACACTAAATAGTGAAATGAATGCCACTTCTCTTACCAATATCACATCATCTTCATCTTCGTCATCGTTTTTCGAAGCAGATGATCAGCTTACAGCGCAAGATGAGGTGAAGGGGGACATTGAAAATGGACCTAAACTCAACGGGTTGCTGGCAGATGAAAAAGAACAAGCAAGAAATACCCAAGAAACAGAACAAAGTCCTGGTTTGATTTCTGAATCACGGGACACCGTAGATGGTTTTCATAATGATGTTTCTGACCACAGCTTAATGACTTTGGACAATGGAGTATCATCTGTTGATAACGATCAGGTCTCTAAAAGTCTGCAGAAGAATTTTGTCGTCAACAGTTCTGAGAAATATCGTGTAGCTCCCAAAAACGAAAAGTACGTTTTAACTAAGAAGACTTTGAATTCGACGAGAGTAAGAACTAGTGCATTGAGCAATTCCCTAAAGGTATCTAAAGTCAGCAACTCAAGTTTAGAAACTCAGGGTGGCAAAAAGGTGAATGGCTCAACAAACGGAACTTCCATAAGAAGCAATTCTGGAGAGAATATGCTCAACGGCGACACGAGCGCAGGCGACTTGGACCTAGAGTCGCGTGACACTGTCCCGAAGTTGCGTGGCACTGAAAGCAAGTCACAGGACATACACCGGAAGTTGAGCGGTTATAACAGGGTGACCGAGCAGCCACTGAGTCGGTCACTTCCGGCTTACAGAAACGCCGCACTGGAGAGTAACTTGCGAGAATCACCGTCGAGAAATCGTTCAAATCAGGGCCACGTTTACGAGCAAGGAAAGTCTCGTCAAAACACAAACTCTAACGCTACCACGCAAAACAGTGGACAACAAGGAAGTACGCCAACCAGTTTGTCCAGATCACCAACTCCCAAAATTTTTTTCAGTAACTTGATGAACCGATTAGGAAGTCGTTTATCTGGAAACAGCCAACATTCAAGTTCTGAGGAATCTCCAAGCTCTTCTAGCGCCAGTTCGCGCGCGTCAACTCCTACTGTTGAACAAAATGTAGTTTTAAGTTTTCGCCTGTCAGCGGACGAATTTCAAACCTATGATCACAAGCTCAAACTGTATTTTGAGCTATCGTTGTTTCGGTGGACCAAGTATGAAGAGTTTAGCTGCTTACTCAAGGCTCCTGTAGTTATCTATGGCAACTCTGAGGAAACGCAGTCTCTCTTAGTCTCATCTAACATCATGTTCTATCTGTGTAGATTTGCTCTCAGAGGAAGTGGAACTCCAGAGGAATGCCTCACTCCGCTGGTGTCGCATCCCTTGGATGATTTAAAGTTTATTGACTCTGGTCTCGGTGGACAGAGTTTTCGCGTTGAATTTTCGCCGCCTGGTGGATGCTACGAGTTCCTAGTTCGTGACAGAGATCGTTGTGAAAAGTTTCTCAGTTTGTTTCTAGACAATGTGCAACGAGCAAAGGCGAAAGCTGGCAGCAAACGTGTTGTTATTAATCCACCTCATCCACAAACCATCGAACATATCAGGTCACAAGTGTTGGGAAAGAAAGTGGAAGATTTCAATTCTATGGGAGAGCGATTTCGTCAACAACTCACGCTTTTCACTGATCCACCGCTTATTAAGGACAGAAAGAGCTTATTAAGAAGCTACTCTAGTTGCTTTGTTGGCCGCGAGTTTGTGGACTGGATGGTACGAGTGCGAGAGGCTGAAAGCAGAGACGAGGCCGTTGACCTTGGACAGCGGCTGTTGGACGCAGGTGCGGTGGAGCACGCGTCAAAGGAACACCAGTTTGAGGACAAAGACCAATATTACAGGTTTACAGAGAATGACGTCACACTCGAACAGTCCATCGCAGGAGACAGTATACCAGATTTAGATACAGGGATTGTATTGTTCATCATGGCGCACCGCTGCACAGATGCAGCAAAACACAATCGCAGTTTGGACCCGGTCAGTGTTGTTGTATCGCGGTCCCACATCGCTATGGTCAAACAGAACCTCCAATGGCCCGTCCCACGGTACACTGATATGCCCCAGGATTTCAAGGGACCTTCTTTTGTGTGCCTCGCAAGACACAAAATCAACGACGTGACTAGCTTGGATTTTTATGAGGACAATCCTTGTTTCATGGGGATCAGTATAACGGACGAGGATGCTCCCGCTGACGTTGCGAAGAGCCAGTGGATAATCAAGACAGAAACAGTGTCTACCCTCTCCTCCCTGGTGAAAGTCATGAAAGAACCTTGGGAGAAACAGTTTGGTGTCGATTTGCAGAAGAATCTCTATCCATCAATAACGGAACACAAATTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F479	Serine/threonine-protein kinase 11-interacting protein OS=Gallus gallus OX=9031 GN=STK11IP PE=2 SV=1
Q69ZK0	Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein OS=Mus musculus OX=10090 GN=Prex1 PE=1 SV=2
Q8TCU6	Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein OS=Homo sapiens OX=9606 GN=PREX1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003172 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15904 all species →	LIP1	LKB1 serine/threonine kinase interacting protein 1	Family	Interproscan
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR031782 all species →	Domain	LKB1 serine/threonine kinase interacting protein 1, N-terminal	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15454 all species →	NISCHARIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18809	TL; protein toll	-	Toll and Imd signaling pathway	ko04624	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.