Gene detail

Detailed information of XP_044181622.1 in Acropora millepora

Genomic Location: NC_058074.1:5090486...5107392
NR annotation: XP_044181622.1, LOW QUALITY PROTEIN: cartilage intermediate layer protein 2-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044181622.1

ATGGACTCAAAACAAGCGTCGAGTAACTCCGTCCATGAAAGGGTTCCTTTAGGAACTAGTACGGAGGCTCTGATTTATGCAGCAACATCCAAAACGGAGCAACCGCCTACTGATCCAGATCTTGTGCCAGTGAAATTCACCGTGATATCAAGTCGAAAGAGGACAGTCCTTTTAGCCACATTGGTAATTGCCGTCGTAATTGCTGCAGTTTTTGTCGGGATTTTTCTTTCACAACGCATCAAGAACAAAGATAAGGAGGAGAGCCAACAAGATAACGTGAAGCTAAGTCTTTCTGTAACGTTGACCTCCAGTTTGAATAATCAGACTCAGCAGGCAGCTTCCTCGTCCACTTTGTCATCTTCGAATGATCTAGGAGCAATTTCGGCCTGTAGCACTTGTAATAAGATGTCTCCTGGAGATATTAGCACACCAGCAACGACATTGTCCTCTCTCTCGTCAATCATGCAGCTTGTTCCAAACACAGAAAATTACGTGAAGATAACTCCTTCCGTAAAGATGACCTCCACTTTGAGAAGCCAAACTCTAGTGAAAGCTTTCACGTCTATACTGACTTCTTCAATTGAGACACGAAGTACTATCTCAACCTGCAGCACTTGCAATAAGATGTCAACGTCACGTGAAGATATAAGCTCACCAGCCACGACTTTGTCCCCTCTCTCGTCAATCATGGAGCTTGTTCCAAATGCAGATGCAAAGTGGAGTCGTTGGAGTCCTTGGAGCGATTGCAGCAAAACTTGTGGTAACGGAACCCGCTTTCGCAGAAGAAAATGTGTTTCAAAAAACCAGCCGCCATTTTCAGCACCCATTTCCTGTGCAGGAAAACCTCAACAAATAGGCAACTGTTCCCAGTGGAAATGTCCAGATTGCAGGAAAATTTGCTTAAAAGGAACCCTGAATTCCGCTTGTGATGCCTGTGTGTGTGATGACCATAAACTCACGGGCCGCGTTCAAACTTCGAATAACGCGCCAATTGCAGGAGCAAAAGTTGCCTTGTCAGACACACCGTACAAAGCTCTGGCGAGAACAGACGACAAAGGCTTTTTCACAGCGCTCAATGTTTGCGCGGATGCAAACCAAGAACTTCTCATTAGTGCCGCTGGTTTTGTTCCAATGAAATTGTTGGCAACTTTATCCACCTCAACTACAGCAAATGTCCTCGCAAAACTCCACAAATCAGTACCCCCTACGGTAACTGTACATCCACAAAGCAAGGTGCGGTTTGCTGGCGACGCCTTAACTTTTTGCTGTGACGGAGTAGGAAATCCCTCACCTGAAATCGAGTGGTTTAAGGACAACAACATTATTGATAAATCCATCCACGGTTACGACAAGAACCTTGAGCTTAGTAACGTGACTGGTTTAGTGGGAAAATACCAATGCCGAGTGGTGAACGACTATGGATCAGAATTTTCTGACATTGCTGATTTGAGAGTTTTCAGTCAACCAAACCCAGACTCCTGCAACCCTATTCCCATCACGAAAAATGCAACACTTCCAACAGGTTGCTATGTAAATGGAACAACGACCAACGTTCTCGATGTTGGCCAGTGCCAACCTGCTTCGTGCATTAGAAGTGACTTTGCTCTTTCAAATAAGACATGTCAAGATGAGAACTTTTGTTGCTCGGTTAAACAAGTAAGCGACGTCACCATAAGCTGTCGAAACTCTGTCACTTTTACAATTTCCAAAGTATCACGTTGTGGCTCAAAATGTAAAAAACTCAAATCACAAATTAATGGGGTGGTGGTCGGTCGAAAAGGAGATATTGAAAAACCTATTATGTACAGCAAGATAAGGCTTCCCTTTGAAGGCTTTTCATACAGAACAAATCGACAGGGCGTTTTCTCTTTTCAAGTGCCTAATGGAAAAAGAAGATTGTCTGTGATATTCAGTGACTCTTTTCGCAAAGAATTTTCAGATGTGACAAAGGTTTTTCATGTAGAAGAAGGCCAGAATATTTTTTCAAAAATTGTTCTCAAACCAAAGCCTGCCTTAAAGCCGTTCAATTCCTCCAAACCATTAAGGGTCCATCTCGGTGAAAGTAAAAATCACACGAAGTTCGCCGAAATGGTAATTCCAGAAGATTCCTTGTTAAGGGATGACGGTACGGTTTTTTCTGGTCAAGCAAACCTTAGAATGGGCGTCGTGAATACCCAAAGCTTTTCTGATGTGCTAACAGCCCCTGCCGATTTCACCTCCGTTGACGAGGATGGAGAGGAACAAATGTTGGTTAGCAACGGAATGCTTAGTTTAGACTTTGAAGATGACAATGGAAAAAGGCTTTCTCCATTTAAGCCCATCAAGCTATACCTCAATCCTGAAAAGTTGAACATATCCGTTGATAGTAATGGAAATACCACAACAAAACTTTGGTGGCTGGAGTCCACAACAGGTAGATGGATCGAAGCATCTGACCTGCGAATGGTTAAGAAAACTTCTGTTAGAGGCAAACGATCCGTTACGCATTTTGTGCTTGAAACTGAAATAGCTGCAGATATCTCGAGACAAGGATGGATAAACATTGACTATGTGGAAAATTTCGGGGCGGTTGGAATAAAAGCTCCAGTGGGATCATCTATTAGAATACTTTGTGAAGAGCTGTATTCAAATCCGAAAAGATATACGGGATATTTCCAAGAAATTGTCGGGGATACAAAAACTGTCTGTATAACCGTTTGGATCGACAGGCTATGCTACATACAAGGAGAAAATAGCAATTCAGTGTTCTTGGAACCTCAAGCTCCTCATCCCACCTTTCCTACCGATGTTTCGGCGGCAGTTATTACAAACAATAAATTGCAAGGTTCAGCATCCAGTTTGTCATCTTTTAAATTTGAAGTCAAGACGTCAAATAATGGTCCAGTATTTCCTCGTCATCCCACTGGTCTCGAAAGGTGTCGCAATGCAAACAAAGCCCTACATTTTGAATTCGAAGACCCCACATCCGCCAGTCTTGACCTCTCAAGTGCTCGCAAACCAGATGACTTTTACTGGTATCCTGAAGATTATGCTTGTTTCATTAAAATACTCCTAAGAGGAAAAAGAACCTCTACATTCCTCGTCAGAAGCTACGGTCCATATAAATCGTGGCACTACGGAGACTCAATTGTAACGGCAGAGGCCATATCTACGGGCGTTTTTGTAGCTTGTGCTGAGATTCGATGTCCAGGAATCGTAGAATTTTCAAATGGAACAATCCTTCACGATAAACAATGGACCCTCGTCCATGTTACTCATTTGACAGGGAACTGTGACTTTCAGAAAAGCTATCTGGATCGCCAACAGAAGCTCGATGGCAAAAACGCCACATGTCCTTCTCGCAACAAACGACATTCACCAGGATCTGAAACGTTGCTCTGTGTTCCCATCCCGCAACCCGGTAACTTCGCTTCATTGTACAATGCTGATGACAAAAACAATCTTGACCTTGGTAAGAATCGGTGCTTAGCCGGAAACAACAGATGGAAAGGGTCACGTCCATTAAAAACAGAAATAGGACCTACTGCAGAGTTTTCTTGCAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IUL8	Cartilage intermediate layer protein 2 OS=Homo sapiens OX=9606 GN=CILP2 PE=1 SV=2
D3Z7H8	Cartilage intermediate layer protein 2 OS=Mus musculus OX=10090 GN=Cilp2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001374 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13620 all species →	CarboxypepD_reg	Carboxypeptidase regulatory-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR039675 all species →	Family	Cartilage intermediate layer protein 1/2	Interproscan
IPR008969 all species →	Homologous_superfamily	Carboxypeptidase-like, regulatory domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15031 all species →	CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_044181622.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.