Gene detail

Detailed information of XP_044182304.1 in Acropora millepora

Genomic Location: NC_058075.1:12744707...12770605
NR annotation: XP_044182304.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114965385 [Acropora millepora]
Species abbreviation AMILL · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044182304.1

ATGAGTGTAAAACAAAAGGCGAAGGCTTTTGAAGCAAGACAGTCCAGTGTCGAAGGAAGCCCTCCCTTGAGGAAAAAAAGCCGCGAAGAAGTCATCGGTAGTTTAAGTGACAAGAGTGAAAGACGTGGCAATTCCTCACCACCTCCTGTGCGTCCCCCAAGGAAGTGCAAAAAAAATGGAACACCTCTTAGCAAGAAGTTGGATGAAACATGTTCCGACATTGAAAAAAGAGAGAAGAGTGAAGTCTTCATATCACCAAAGCCAGTGAGCAGTAACAACACCCTTAAAAAGCAGAGCAAAGTTCAAGGTCAGAAGACAAAGAAACCCAAACCACCTCCACCCCCAAGGGTAAGTTCGCTTGGACGCAATACTCCGTTGCCAGATAATCTAAAGTCAAATGCTGGTAGGAAGAAACCACGGCCACCAGTCCCTCCAAAGCCTACGAATTATGTCTCGAAGAGGCAATCAATGCAACGCAGTGTTGATGTAAAACCTGCTGTTCAAGCAGTTGTTCTCACAGTAGATGAAAAGGCTGTCTCGTCACCTCTAAAAGAAGATACCCAAGACTCACAAGTGACTCAAGTTTTCATTTCTTTGGGAAGACATTCCTCAGGTGAAAAACCATTGATGACAGGGGATGGTACAGTGAAGGAACAAATCCCTGATGAGGCAGTTCAAACAAATGAAAAAACTAGAACAGTCAAAAATGGTGTTAAAAATGACTTGGATAACTCTGAGGTGCATGAAAATGGCTTAGTGCCATCTCACTCAGGGATGAGCATTTATGCTCGTGAAATTGTGTCCGATGTTAATTCAGGGAGAGAATCCCCTGATCCACTTGAAAATTTAGAAATAGAAGCTACAGCTTTGAGCGAAGAAGAAGAGGAAGAATTGAATTTTCTTAAAGCATCTGTTGAAGTGAACAAATCAAATACTCATTTGTCGGAGTCAGGAAGCAAAAGCAATGAGGAAGAGGTTGCAAGCAGTGATGCTGATGTTGTTTTAAGAGGACAGATTTCTGGCGAGGAAAGCGCAAGTGATTCTGAGAAAAATTATAAGGTGGAGTACAGTCTTGTTCTTGAGGAGGAGTGTTCAGTAACTATGATAAAAGACATAGAGGTTGAACAGAAACCTGCTGATGTTACAACAACTGTGAGCAATGGTTTTGTCAAAGCAGTGGCAGAGGAACAACTGGAGGATGCAAATGGACAAAGATATGCCTCAGAAAGTATTAGTGTTAGTAGACTAGAGGATCCGAGGGTTGAAATATCTGAAAATAGTCCCGATGAGTGTGAAAATATTGTAGCTGTATGTGTTGAACGTGATGTGGCTGAAAATGATGCAGTGAAAACTGCAGATGAAAATAATGGAGATGCAGGTCAAAACATTGTAGAGGGGGTGATGCCTGGCAAGGATATAAGTGAAGGTAGTGCAGAATTCAAAGTAGCTGTGGAACTTGACATACAGTTAGTTGCACAAGGCAGTGATGACCGATATGATATGCATAAAGGCAATGCAGATGATGATGTAGGGTTAGCTAATACATCAACGGACTCAGTGGAGAATGGTGCTGAAATGAACCAGAATATTATTGAAGCCGAGCCAGTTAGTGAAGGGATTTTTATTTCAGTTAGTGATCATGCAGTAATTGAAGGCAAAGCAGTTGCAGCTGAAGCAGACGAGAAAAATGCAATTGAGTCAAATGTTCATGAAGAAGAGGACAGAAAAGAAGAGAAATTGGAAGAGGTTGCTTCCTTGTCAGAGAGCAAAGTTGTTACTGAACCAAAGGCTGAAGGTCTGATTGAAGGACGAGAAGACAACCGTGAAAATAATCTTTTAGTGAATACAAATCAGGTGGATTCCAATTTAGAAGAGAATTTGTCAGAATGGAAATATGGTAATGGTGACATCATTGACGGAGGATTGAACAATATTGAAAACTGTGTTTTTGATTCGGGTATTGATGAAGCTTGCAATGAAAGGAGAACAGTTGATCAAGGAACAAACAACATATCTTCTGTTACAAGTCCTGATCAGCTGAATGAAATAGCTACTGAATCAGCCCTATCCGCACCTTTGATAGAGGGCAGTTTATTGGAAACATCATCAGCTTCTTGTGAGATGCCTCAGAGTGATGTTGGTATTCCTGTGCAAGTACAGGAGGCTGAGAATGTCCAGACCGCATTAGAGAAACCTCATAACACAGAGAAACCAGACTCAAAAGCTTTAGAACCTGAGCGTGAAACAAAGGTGATTTCATCCGAACCTTTGCCATTGGATGGAACAAGTGCTGGTAAACCAAAACGACAGAAGCATACTTATGAAAATGTAGACTTTGATAAAATGGTAGAAAGACGACAAAGCCAGAAAAAGAACACTTTTAGGGATCTCTCTGGAAGATCCCATTCCTTTAGTAACTACGATGCTGAGGTTTATTCAGTGCCACGCCCGGCACGACGTGTATCAGATGATGACGCAATTTACAGAGTGCCACGTCAAAGTGTTTTAGTTTGTCCAAACAAAGGTGCTGGTGTTGGTGATAGTGATGCAATATATAGGACCCCAAATGTGGTTTCAGCTACCCCTGTTAAAGGTAGTGATTATGCTGTACCAAAACCAGTTTTGGTCAAAGATGTTCGTGTGTACGCAGTCCCAAGAACACCTGCACTGATTCCTGTTTCCAAGCTTGAGAAAGAAGAAGTGGGCCCAGTTGCATCAGAAACTGATGGCATTTATGCTGTGCCTGCTGCGATCTCTTCACCTAGTTCTGAGAAGGAGGAGGTTAGCCTAGTTGCGTCAGAAACTGGTAGCAACTATGCTGTGCCTGGAGCAACATCTTCACCTAGTTCTGAGAAGGAGGAGGTTAGCCTAGTTGCGTCAGAAACTGGTAGCAACTATCCTGTACCTAACGCAACATCTTCACCAGGTTCTGACATTGAGGAGGTTATTCCAGCTGCATCAGAAACTGGGGGTATTTATGTTGTGCCTGCAGCAACAACTTCTCCACCACCTAAGCCTCCACGGATGAGTCTTGTACTTGATAATGATAAAACAGAGCAATTCAAGGTAGAAACGGTTGCTGCTGTGGAATCTCCGAAGCCAAAGCCAAGGACACGGATCACTGAAGTGTCGCCGGCCATTAATGAGCCGAGGGGTTCACCAACACCTTTACCAAGAAAAGAAAACAAAAATGATACTTCAGAATCTCCCACACCCAAAATGAAGGCCCGGGGATCTTCACCTATTACTGTGCCACGCAAAGTAAGCAAGACAGAAGCATCAGAGGTTGAAAGCAAACAACAGAAGGCCTCACCAAGCCCTGTACCGAGAAAGTCAGCTAAAGTGTCTCAAGTTGCCGAGATTCATAAGCCATCTAGAAGGCAGTGGATCGCCATCACCCATTCCACGGCAACGATCGAATGCTTAAAGTCACAGGAACCGAAGCTCTCTAAACCTGAGATCACCATATCAGGAAGTAAGGAAGGTGACACCCCATCAAAACGCAGGGTGGCACCTCCACGACCACCACCACCAAACAGAATGAGCATTACCAGTAATGAAAGCGCTGATCAAGCTTCACTTTCTCCTGGAAATGATTTAGGCTCTGACTCCGATTCCGATGTTGAACAAGAAATGCCAAAGGGTCCACCAAAGCCTAAAACTTACTACATTGCGCATGAAATTCTTTCTACTGAACAATCATTTGTGGCTGCTTTGAAACTTGTTTTTGAGGAGTGTTATGGCACCATCAAGACGGCCGGTGTTGTAGCAGACTCAGTTTTGACTGATATATTTAGAGATTTGGAAAACATTTACCTGCTAGATTCCAGATTTTTGCAGGAGCTGGAAGAAAGGATGGCCACTTGGGAAGAGCATGAACGAATTGGGGACATAATCAAGAAATATGGACACTTTTTGAAGATGTACACCCAATATGTGAATGGCTATGACAAAGCAATGGGCGTTTTTCAAGACACCATGAAAGAGAATTCGGAATTTGCCAACTTAGTAACACAGTTCCAGACAAGTAAAAAGTGCCATGGCCTTGTTGTTTCATCTTACATGTTGAAACCAGTTCAACGAATTCCAAGTTACAGACTTCTTCTAATAGACTACCTGAAGCATCTGCCAAAGGATGGCGAAGAATATGCCGACACTGAAACTGCCTTAAAGATCGTGTCAGAGGTTGCGACTCACATCAATGAGTCGATGAAGAAGCTGGACAGTTTTGAGCAGTTGTTAAAACTGCAAAACATGCTTGTTGGAAATCCAGAGATTGTAAAGGCAGGAAGGGATTATCTGAAGGAGGGAATGCTGATGAAGTTATGCCGCAAAGACATGCAAGAGAGAATGTTCTTTTTGTTGACTGACGTTTTGTTGTACACTACACCCATCGGCGGAAACCAGTACAAACTCAATAAAATGCTTCCTTTGCTTGGAATGCAGGTTACTGTCCCAGATTCGCCCGATTTGGTCAACGAATTCAGCATCATCAGCACAACACGATCATTCACCCTAACTGCAAGTACGCCCGAAGAAAGAGATGATTGGATCGAGTCTTTAAATAAAGCCATTGATATCGTGACGAAAAGAAAAATCACCTTTGTGAATAAAACCAGATGTGATTCAGCAGGAGTGGCCGAGACAGAAACAGACGGAACAACAAAACTTGGTGAAAAAGCACCCGTTTGGATTCCGGACGCACGGGTAACCATGTGCATGAGTTGTACGAAACCCTTCACCGCTATAAACAGAAGACACCACTGTCGAGCATGTGGCAATGTTGTGTGTGGTTCATGTTCCGACAGCACTGCGCCTTTAGCCTACCTGGACTATACTCAGGCCAGGGTCTGTGACAAGTGTTATGATCTACTATTAAAAGAGTTCCACACCGATGAAATGAACATCGACGCGGAAGAAGAGAAAGCCCCCTTGCCGCCATTACTGAAAGAATCAGACATCACAGACAAGATGCTACGCAAACCTACCAAGTTTGAGATAATGCGGCGTTTTAAGAGTAAAAGATCAAAACGAAAATCGCAGATACTTCATCCCACCCACTTAACGGAGGTTGTGGCCAATCAAGGTGGGATACAAATGAGCGGATATTTAAGGTACAAGAAACTCAGGCACGGATGGAAGAAGTCTTGGTTTGTGCTAAAGGACAGTGTGTTGTACTCGTACAAAGCAAGTTCGGACGTTGTTGCTCTCGAAACGTTGCCAGTGCTGGGGTACTCAATTGAAGACGTGGGAAAGGAAGGAGATGAGTTTGTGTTCCAGCTAAAACACCAAGGCCTTCCGCCAACTGTGTTCAAAGCAGACCAAGAAACTTCAGCAAAAAGGTGGATAGCCGAACTAAAGAAAGCTACGACTATGAGTTCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q69ZL1	FYVE, RhoGEF and PH domain-containing protein 6 OS=Mus musculus OX=10090 GN=Fgd6 PE=1 SV=2
Q6ZV73	FYVE, RhoGEF and PH domain-containing protein 6 OS=Homo sapiens OX=9606 GN=FGD6 PE=1 SV=2
Q96M96	FYVE, RhoGEF and PH domain-containing protein 4 OS=Homo sapiens OX=9606 GN=FGD4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001392 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051092 all species →	Family	FYVE, RhoGEF and PH domain-containing	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12673 all species →	FACIOGENITAL DYSPLASIA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005089 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05724	FGD5_6; FYVE, RhoGEF and PH domain containing 5/6	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.