Gene detail

Detailed information of XP_044182736.1 in Acropora millepora

Genomic Location: NC_058075.1:8067714...8070326
NR annotation: XP_044182736.1, uncharacterized protein LOC122963367 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_044182736.1

ATGGGGGCGCGTCGTCAAACTTTAGCACACAAGCAACGAATGCCAACCAGTCAAGGTGGTACTGATAAATATGCCTTCTGTGCACCGTATGATGGTCATTTCGTTGACAATAAGCAAAGTCACTGTCGTCCAGTGATCCGTTCAAGTTCCCAGTCCGAAAATACAACTCATGTGAGTCGAGAAGAATTTGCACGTGATGTTTCTGATTCAAATAATTTGTGTGATCATGTCAACCAAGCAGAGAATGCTTTGACTAAGATGATAGAGTCATTAACTGGGGTCATAGCAAAATTCGAGAATTTAGTTAATGGTATGTCATGCAGTAATGACACTAAAAGTAAGCAAAATGGCAAAGATTTGCCGCATGTTTTTGTTTCGTCTTCTCAAAATGAAGATCATGTCGAAAAGCTCTCTAGTAAAGACTCTCCTCAAAATGTTGATGAGCGCGTTGATCCAATTGGCCCCGTTGTTTGCAAGGACGAAGTGCATTTGGTTAATCAAAACAGTCCTGTTCAAAACAGTGTATGTTACAGTCAAGGAAAGGAAATAGATTCAAGTGTTGTTTTGCATAACGTAGTAGTTGAAGTTGATCCTCAAGTGTTTGAAGTCGCTAATGTCGAAGAAAGCGATGTAGTTTTTGAGGATGCACAAGTAGATTTGTGCGATGTTTTGGACCACGATGATGTCAAGATTACTGAATTGTTAGTTAATGATTCCGAAGTTGCTGGTTCGCATTTGACCAAAAGTGTTACCGGTGAAGTCTCGCCTATTGCTGCCAATAAAGAAGCCATTGAAGAAACCAATCATGGCGATATTGTGTCAAATGAGCAGACACAGTTCTTAGACGAAATTAATTCTCCATTCCATACAAAGGATTCCACGATTTCCCTTAATATCGCACATTTGAATTTCCGAGCGTTGATAGATACAGGTGCTGCCGTTACTGCAGTAAGTGCTCGCGTTTGGCAAAGGTGCTCAAGTAACATAAGCCTTAATTTAGGACCACCGAATCACGATTCCATAACAACAGTGGATGGGTGTTTGCTTAAGGTAATAGGTAGAGTGATGTTGCCGTTTGCAATCGGTTCTAAGACTTTTCCTTTTGAGGCTCATGTGATTCAAGATTTGACTTCCGATGTGATCTTAGGAAGGAACTTTTTCGAAAAATTTTGTGCTAAAATTGATTTTGATGAGGGTATGATACGATTTAGACATGGGGAAGACCCATTGCCTTTTGATTCCGATCCGGTTACTATCGATAAGGATTGTTGTCCTGAATTTGTTTGTTCTGTGCATGCTGACACAGCCTTTACCATTCCACCACAGTCAGAAATCATAGTGCTAGGCAGATTGAATGCAGAATTGCCCTTGAAGAGAACTGTCTGCGGTTTAGTAGTGCCACGAAACGATTTGCCTCACCGTTACTCACTTTTTGGAGCATCAGAGCTTATCAAGGTCACCGAGGATGGTACTCTTCCGGTTAGAATGGTTAACCCGTCCGCTCGTCCAGTTAAAATATTTCGCAAAACAAGACTGGGTGATTTTGAAAGCGTAGAGGATAGAATTGAAACATTCCAGCTCAGCGAGGCACCAGAGGAATTCTCTTATTCGTTTAAGACTAGGGAGAAACATTCACAAGCCGATTATTCTGAGTTCCCTGATTTATCCGACAGCGTTCTCAGTGAAGCTGACAAAATTAAATTCGGTGACTTATTCCAGTCCTACCGTGATGTTTTTGCTTTTACTGATGACCAACTTGGAAAAACTTCTCTCGTCCAACACGTAATAGACACAGGTGATGCACTGCCTATTAAGCAACGGCCGTATCGAACCAGTCCTAAGTGTAAACAAGAGATTGATCGCCAAGTGGAGGATATGCTCCAAAAAGGAATAATTAGAGAATCCGTTTCTCCATGGAGTTCACCCGTAGTTCTCGTCAAGAAAAAGGATGGTAGTTTTCGTTTTTGTGTCGATTTGAGGAAAGTTAATGCAGTTACGAGGAAAGATAGTTTTCCTATGCCTTTAGTGTCTGATACTCTTGATGCTTTGAGTGGAACTAAGTATTTTTCTACGCTTGACTTAAAATCGGGTTATTGGCAAATTGAAATGCATCCAGAGTCTCGAGAGAAAACAGCTTTCGTTACACACAACGGTCTTTACGAATTTAATGTCATGCCGTTTGGTCTTACCAATTCCGGCGCTAGCTTTCAGTGTCTTATGGGCCATATACTTCGAGGATTGGAGTACAGATTTGCTTTGATTTACATCGATGATATTGTCATCTTTTCTAAGTCGATTGACGAACATTTGACCCATTTGGAGGAAGTTTTTAGAAGATTGCGTGAGGCTAACGTGAAATTGAACCCAAAGAAATGCAGCTTTGTCAAACAACGAATCGAGTATTTGGGTCATGTTGTGACTCCAGAAGGTATCTTCCCTGACCCTGGTAAAGTAGAAGTCGTTAAGAACTTTCCAACACCAGCGAGTCTAAAGGAGTTAAAGAGTTTTCTGGGTTTAGCTAATTATTACCGGCGCTTCATCAAAGGTTTCTCAGAAATTGCTAGTCCTCTTAATGCATTAACAAAGAAGGGCGTTAAGTTTTGTTGGTCTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR053134 all species →	Family	RNA-directed DNA polymerase homolog	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559 all species →	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_044182736.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_044182736.1 across 54 RNA-seq samples of Acropora millepora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

54Samples

8TPM > 0

2Conditions

27.3Max TPM

1.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole larvae	30	6	1.59	10.87
branch	24	2	1.49	27.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR1929612	whole larvae	whole larvae	adult	not recorded	SRP056536	10.87
SRR1929614	whole larvae	whole larvae	adult	not recorded	SRP056536	10.63
SRR1929627	whole larvae	whole larvae	adult	not recorded	SRP056536	8.23
SRR1929629	whole larvae	whole larvae	adult	not recorded	SRP056536	7.63
SRR1929621	whole larvae	whole larvae	adult	not recorded	SRP056536	6.92
SRR1929605	whole larvae	whole larvae	adult	not recorded	SRP056536	3.45
SRR1929606	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929607	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929608	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929609	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929610	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929611	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929613	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929615	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929616	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929617	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929618	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929619	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929620	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929622	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929623	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929624	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929625	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929626	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929628	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929630	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929631	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929632	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929633	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929634	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929595	branch	branch	adult	not recorded	SRP056536	27.29
SRR1929599	branch	branch	adult	not recorded	SRP056536	8.36
SRR1929581	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929582	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929583	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929584	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929585	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929586	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929587	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929588	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929589	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929590	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929591	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929592	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929593	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929594	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929596	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929597	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929598	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929600	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929601	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929602	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929603	branch	branch	adult	not recorded	SRP056536	0.00
SRR1929604	branch	branch	adult	not recorded	SRP056536	0.00

Source: CnidoSite RNA-seq expression matrices (AMILL_TPM, StringTie quantification over 54 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.