Genomic Location: NC_058075.1:15525898...15535985
NR annotation: XP_044182811.1, uncharacterized protein LOC114953234 isoform X5 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044182811.1 |
| Protein |
| XP_044182811.1 |
| UniProt accession | Description |
|---|---|
| Q8NDA2 | Hemicentin-2 OS=Homo sapiens OX=9606 GN=HMCN2 PE=1 SV=4 |
| P70232 | Neural cell adhesion molecule L1-like protein OS=Mus musculus OX=10090 GN=Chl1 PE=1 SV=2 |
| Q96RW7 | Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008072 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13927 all species → | Ig_3 | Immunoglobulin domain | Domain | Interproscan |
| PF07679 all species → | I-set | Immunoglobulin I-set domain | Domain | Interproscan |
| PF01391 all species → | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| PF00084 all species → | Sushi | Sushi repeat (SCR repeat) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000436 all species → | Domain | Sushi/SCR/CCP domain | Interproscan |
| IPR036179 all species → | Homologous_superfamily | Immunoglobulin-like domain superfamily | Interproscan |
| IPR007110 all species → | Domain | Immunoglobulin-like domain | Interproscan |
| IPR003599 all species → | Domain | Immunoglobulin subtype | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR013098 all species → | Domain | Immunoglobulin I-set | Interproscan |
| IPR035976 all species → | Homologous_superfamily | Sushi/SCR/CCP superfamily | Interproscan |
| IPR008160 all species → | Repeat | Collagen triple helix repeat | Interproscan |
| IPR003598 all species → | Domain | Immunoglobulin subtype 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10075 all species → | BASIGIN RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007156 all species → | Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | Interproscan |
| GO:0007411 all species → | Biological Process | axon guidance | Interproscan |
| GO:0030424 all species → | Cellular Component | axon | Interproscan |
| GO:0070593 all species → | Biological Process | dendrite self-avoidance | Interproscan |
| GO:0098632 all species → | Molecular Function | cell-cell adhesion mediator activity | Interproscan |
XP_044182811.1.Transcript abundance of XP_044182811.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
