Genomic Location: NC_058077.1:20126503...20131361
NR annotation: XP_044184329.1, protein archease-like isoform X1 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044184329.1 |
| Protein |
| XP_044184329.1 |
| UniProt accession | Description |
|---|---|
| Q2YDE7 | Protein archease OS=Bos taurus OX=9913 GN=ZBTB8OS PE=2 SV=2 |
| Q505B7 | Protein archease OS=Mus musculus OX=10090 GN=Zbtb8os PE=1 SV=2 |
| Q8IWT0 | Protein archease OS=Homo sapiens OX=9606 GN=ZBTB8OS PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006502 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01951 all species → | Archease | Archease protein family (MTH1598/TM1083) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036820 all species → | Homologous_superfamily | Archease domain superfamily | Interproscan |
| IPR002804 all species → | Family | Archease | Interproscan |
| IPR023572 all species → | Domain | Archease domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12682 all species → | ARCHEASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006388 all species → | Biological Process | tRNA splicing, via endonucleolytic cleavage and ligation | Interproscan |
| GO:0072669 all species → | Cellular Component | tRNA-splicing ligase complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K24956 | ZBTB8OS; protein archease | - | Transfer RNA biogenesis | ko03016 | deepkoala |
Transcript abundance of XP_044184329.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
