Detailed information of XP_044184837.1 in Acropora millepora

Genomic Location: NC_058077.1:19449831...19458097
NR annotation: XP_044184837.1, meiosis-specific with OB domain-containing protein-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4R8G6Meiosis-specific with OB domain-containing protein OS=Macaca fascicularis OX=9541 GN=MEIOB PE=2 SV=1
Q9D513Meiosis-specific with OB domain-containing protein OS=Mus musculus OX=10090 GN=Meiob PE=1 SV=3
B0BMX9Meiosis-specific with OB domain-containing protein OS=Rattus norvegicus OX=10116 GN=Meiob PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006299 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16900
all species →		REPA_OB_2Replication protein A OB domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR031657
all species →		DomainReplication protein A, OB domainInterproscan
IPR052469
all species →		FamilyMeiosis-specific OB domain-containingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21166
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000712
all species →		Biological Processresolution of meiotic recombination intermediatesInterproscan
GO:0003697
all species →		Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0008310
all species →		Molecular Functionsingle-stranded DNA 3'-5' DNA exonuclease activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22420MEIOB; meiosis-specific with OB domain-containing proteinEC:3.1.-.-
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_044184837.1 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

54Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole larvae 30 0 0.00 0.00
branch 24 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (AMILL_TPM, StringTie quantification over 54 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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