Genomic Location: NC_058078.1:108469...126010
NR annotation: XP_044185208.1, neuroblast differentiation-associated protein AHNAK-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_044185208.1 |
| Protein |
| XP_044185208.1 |
| UniProt accession | Description |
|---|---|
| Q0P5F3 | Protein lin-7 homolog C OS=Bos taurus OX=9913 GN=LIN7C PE=2 SV=1 |
| Q5F425 | Protein lin-7 homolog C OS=Gallus gallus OX=9031 GN=LIN7C PE=1 SV=1 |
| Q9NUP9 | Protein lin-7 homolog C OS=Homo sapiens OX=9606 GN=LIN7C PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010544 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00595 all species → | PDZ | PDZ domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR052082 all species → | Family | Peripheral myelin sheath structural protein | Interproscan |
| IPR036034 all species → | Homologous_superfamily | PDZ superfamily | Interproscan |
| IPR001478 all species → | Domain | PDZ domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23348 all species → | PERIAXIN/AHNAK | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0043484 all species → | Biological Process | regulation of RNA splicing | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23934 | AHNAK; neuroblast differentiation-associated protein AHNAK | - | Salmonella infection | ko05132 | deepkoala |
Transcript abundance of XP_044185208.1 across 54 RNA-seq samples of Acropora millepora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 1 | 0.65 | 15.63 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.