Detailed information of XP_046840402.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813447.1:12765065...12771213
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 Gene family
Family typeMembership / link
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity RING|U-box · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04564
all species →		U-boxU-box domainDomainInterproscan
PF08606
all species →		Prp19Prp19/Pso4-likeDomainInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR003613
all species →		DomainU-box domainInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR038959
all species →		FamilyPre-mRNA-processing factor 19Interproscan
IPR013915
all species →		DomainPre-mRNA-splicing factor 19Interproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43995
all species →		PRE-MRNA-PROCESSING FACTOR 19Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000974
all species →		Cellular ComponentPrp19 complexInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071006
all species →		Cellular ComponentU2-type catalytic step 1 spliceosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10599PRPF19, PRP19; pre-mRNA-processing factor 19EC:2.3.2.27
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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