Detailed information of XP_046840478.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813447.1:13260305...13264827
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04057
all species →		Rep-A_NReplication factor-A protein 1, N-terminal domainDomainInterproscan
PF08646
all species →		Rep_fac-A_CReplication factor-A C terminal domainFamilyInterproscan
PF01336
all species →		tRNA_anti-codonOB-fold nucleic acid binding domainDomainInterproscan
PF16900
all species →		REPA_OB_2Replication protein A OB domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR004591
all species →		FamilyReplication factor A protein 1Interproscan
IPR007199
all species →		DomainReplication factor-A protein 1, N-terminalInterproscan
IPR013955
all species →		DomainReplication factor A, C-terminalInterproscan
IPR004365
all species →		DomainOB-fold nucleic acid binding domain, AA-tRNA synthetase-typeInterproscan
IPR031657
all species →		DomainReplication protein A, OB domainInterproscan
IPR047192
all species →		DomainReplication factor A, C-terminal, eukaryotesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23273
all species →		REPLICATION FACTOR A 1, RFA1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006260
all species →		Biological ProcessDNA replicationInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0006310
all species →		Biological ProcessDNA recombinationInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0000724
all species →		Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0003684
all species →		Molecular Functiondamaged DNA bindingInterproscan
GO:0005662
all species →		Cellular ComponentDNA replication factor A complexInterproscan
GO:0006289
all species →		Biological Processnucleotide-excision repairInterproscan
GO:0007004
all species →		Biological Processtelomere maintenance via telomeraseInterproscan
GO:0043047
all species →		Molecular Functionsingle-stranded telomeric DNA bindingInterproscan
GO:0051321
all species →		Biological Processmeiotic cell cycleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K07466RFA1, RPA1, rpa; replication factor A1-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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